YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25303433
Organism:	Streptococcus pneumoniae
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25303433.

Description	E-value	Query Range	Subject Range
gi\|16801721 - gi\|16801721\|ref\|NP_471989.1\| hypothetical protein lin2660 [Listeria innocua Clip11262] gi\|25303440, gi\|... - pir\|\|AF1764 conserved hypothetical protein homolog lin2660 [imported] - Listeria innocua (strain Cli...	246.0	[0..3]	[208..5]
gi\|228855938, gi... - gi\|228903670\|ref\|ZP_04067790.1\| IMPACT family member yvyE [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228848687, gi... - gi\|228911032\|ref\|ZP_04074840.1\| IMPACT family member yvyE [Bacillus thuringiensis IBL 200], gi\|22884... gi\|228961435, gi... - gi\|228961435\|ref\|ZP_04123048.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar pakistani ... gi\|75759037, gi\|... - gi\|75759037\|ref\|ZP_00739145.1\| Hypothetical protein RBTH_03569 [Bacillus thuringiensis serovar israe... gi\|228791389, gi... - gi\|228968312\|ref\|ZP_04129309.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar sotto str.... gi\|228722515, gi... - gi\|229050859\|ref\|ZP_04194411.1\| IMPACT family member yvyE [Bacillus cereus AH676], gi\|228722515\|gb\|E... gi\|228670986, gi... - gi\|229112606\|ref\|ZP_04242143.1\| IMPACT family member yvyE [Bacillus cereus Rock1-15], gi\|228670986\|g... gi\|228652783, gi... - gi\|229130444\|ref\|ZP_04259400.1\| IMPACT family member yvyE [Bacillus cereus BDRD-Cer4], gi\|228652783\|... gi\|229147728, gi... - gi\|229147728\|ref\|ZP_04276071.1\| IMPACT family member yvyE [Bacillus cereus BDRD-ST24], gi\|228635741\|... gi\|218161230, gi... - gi\|218233273\|ref\|YP_002369973.1\| conserved hypothetical protein TIGR00257 [Bacillus cereus B4264], g... gi\|30023232, gi\|... - gi\|30023232\|ref\|NP_834863.1\| Xaa-Pro dipeptidase [Bacillus cereus ATCC 14579], gi\|29898792\|gb\|AAP120...	246.0	[0..1]	[208..3]
gi\|152977406, gi... - gi\|89201180\|ref\|ZP_01179926.1\| Protein of unknown function UPF0029 [Bacillus cereus subsp. cytotoxis...	245.0	[0..1]	[208..3]
gi\|163942881, gi... - gi\|89205062\|ref\|ZP_01183635.1\| Protein of unknown function UPF0029 [Bacillus weihenstephanensis KBAB...	244.0	[0..1]	[205..3]
gi\|116515439, gi... - gi\|116515439\|ref\|YP_817421.1\| hypothetical protein SPD_2036 [Streptococcus pneumoniae D39], gi\|11607... gi\|15459719, gi\|... - gi\|15904055\|ref\|NP_359605.1\| hypothetical protein spr2014 [Streptococcus pneumoniae R6], gi\|15459719... gi\|25303437 - pir\|\|C98123 conserved hypothetical protein spr2014 [imported] - Streptococcus pneumoniae (strain R6) gi\|147923289, gi... - gi\|148984512\|ref\|ZP_01817800.1\| hypothetical protein CGSSp3BS71_10673 [Streptococcus pneumoniae SP3-... gi\|221232910, gi... - gi\|221232910\|ref\|YP_002512064.1\| hypothetical protein SPN23F_22420 [Streptococcus pneumoniae ATCC 70... gi\|225857778, gi... - gi\|225857778\|ref\|YP_002739289.1\| hypothetical protein SPP_2262 [Streptococcus pneumoniae P1031], gi\|... gi\|168494030, gi... - gi\|183575911\|gb\|EDT96439.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC3059-06], gi... gi\|194397335, gi... - gi\|194397335\|ref\|YP_002038805.1\| conserved hypothetical protein [Streptococcus pneumoniae G54], gi\|1... gi\|183569909, gi... - gi\|183569909\|gb\|EDT90437.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC1087-00], gi... gi\|183574018, gi... - gi\|183574018\|gb\|EDT94546.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC0288-04], gi... gi\|172042422, gi... - gi\|172042422\|gb\|EDT50468.1\| conserved hypothetical protein [Streptococcus pneumoniae CDC1873-00], gi... gi\|147930806, gi... - gi\|149020128\|ref\|ZP_01835102.1\| hypothetical protein CGSSp23BS72_08834 [Streptococcus pneumoniae SP2... gi\|149007747, gi... - gi\|149007747\|ref\|ZP_01831356.1\| hypothetical protein CGSSp18BS74_00225 [Streptococcus pneumoniae SP1...	244.0	[0..1]	[211..1]
gi\|42784350, gi\|... - gi\|42784350\|ref\|NP_981597.1\| hypothetical protein BCE_5305 [Bacillus cereus ATCC 10987], gi\|42740281...	243.0	[0..1]	[208..3]
gi\|47568480, gi\|... - gi\|47569304\|ref\|ZP_00239989.1\| conserved hypothetical protein protein TIGR00257 [Bacillus cereus G92... gi\|228936483, gi... - gi\|228936483\|ref\|ZP_04099281.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar andalousie... gi\|196039518, gi... - gi\|196039518\|ref\|ZP_03106823.1\| conserved hypothetical protein TIGR00257 [Bacillus cereus NVH0597-99...	243.0	[0..1]	[208..3]
gi\|228596111, gi... - gi\|229187407\|ref\|ZP_04314550.1\| IMPACT family member yvyE [Bacillus cereus BGSC 6E1], gi\|228596111\|g... gi\|228658798, gi... - gi\|229124703\|ref\|ZP_04253884.1\| IMPACT family member yvyE [Bacillus cereus 95/8201], gi\|228658798\|gb... gi\|229094291, gi... - gi\|229094291\|ref\|ZP_04225367.1\| IMPACT family member yvyE [Bacillus cereus Rock3-42], gi\|228689144\|g... gi\|228810671, gi... - gi\|228948915\|ref\|ZP_04111188.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar monterrey ... gi\|51973838, gi\|... - gi\|52140369\|ref\|YP_086461.1\| hypothetical protein BCZK4891 [Bacillus cereus E33L], gi\|51973838\|gb\|AA... gi\|218906373, gi... - gi\|218906373\|ref\|YP_002454207.1\| conserved hypothetical protein TIGR00257 [Bacillus cereus AH820], g... gi\|196045661, gi... - gi\|196045661\|ref\|ZP_03112891.1\| conserved hypothetical protein TIGR00257 [Bacillus cereus 03BB108], ... gi\|118480233, gi... - gi\|118480233\|ref\|YP_897384.1\| hypothetical protein BALH_4691 [Bacillus thuringiensis str. Al Hakam],... gi\|228930198, gi... - gi\|228930198\|ref\|ZP_04093207.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar pondicheri... gi\|228841849, gi... - gi\|228917800\|ref\|ZP_04081339.1\| IMPACT family member yvyE [Bacillus thuringiensis serovar pulsiensis... gi\|225867160, gi... - gi\|225867160\|ref\|YP_002752538.1\| conserved hypothetical protein TIGR00257 [Bacillus cereus 03BB102],...	243.0	[0..1]	[208..3]
gi\|167529348, gi... - gi\|167635305\|ref\|ZP_02393620.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. A0... gi\|167511511, gi... - gi\|167640468\|ref\|ZP_02398731.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. A0... gi\|164714288, gi... - gi\|165869965\|ref\|ZP_02214622.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. A0... gi\|30259899, gi\|... - gi\|30265222\|ref\|NP_847599.1\| hypothetical protein BA5431 [Bacillus anthracis str. Ames], gi\|30259899... gi\|254686380 - gi\|254686380\|ref\|ZP_05150239.1\| hypothetical protein BantC_21330 [Bacillus anthracis str. CNEVA-9066... gi\|229268177, gi... - gi\|229603769\|ref\|YP_002869416.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. A... gi\|227007278, gi... - gi\|227817956\|ref\|YP_002817965.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. C... gi\|254755626 - gi\|254755626\|ref\|ZP_05207659.1\| hypothetical protein BantV_24411 [Bacillus anthracis str. Vollum] gi\|254744327 - gi\|254744327\|ref\|ZP_05202007.1\| hypothetical protein BantKB_25564 [Bacillus anthracis str. Kruger B] gi\|254735584 - gi\|254735584\|ref\|ZP_05193291.1\| hypothetical protein BantWNA_10549 [Bacillus anthracis str. Western ... gi\|254724378 - gi\|254724378\|ref\|ZP_05186162.1\| hypothetical protein BantA1_18238 [Bacillus anthracis str. A1055] gi\|254757081 - gi\|254757081\|ref\|ZP_05209109.1\| hypothetical protein BantA9_02097 [Bacillus anthracis str. Australia... gi\|49181959, gi\|... - gi\|49188032\|ref\|YP_031285.1\| hypothetical protein BAS5046 [Bacillus anthracis str. Sterne], gi\|49181... gi\|47530744, gi\|... - gi\|47530744\|ref\|YP_022093.1\| hypothetical protein GBAA5431 [Bacillus anthracis str. 'Ames Ancestor']... gi\|172081708, gi... - gi\|177652933\|ref\|ZP_02935260.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. A0... gi\|190561222, gi... - gi\|190567806\|ref\|ZP_03020718.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis Tsianko... gi\|170688006, gi... - gi\|170688006\|ref\|ZP_02879219.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. A0... gi\|170127360, gi... - gi\|170707803\|ref\|ZP_02898254.1\| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. A0...	242.0	[0..1]	[208..3]
gi\|46908688, gi\|... - gi\|46908688\|ref\|YP_015077.1\| hypothetical protein LMOf2365_2489 [Listeria monocytogenes str. 4b F236... gi\|225877526, gi... - gi\|226225064\|ref\|YP_002759171.1\| hypothetical protein Lm4b_02485 [Listeria monocytogenes Clip81459],... gi\|254993055 - gi\|254993055\|ref\|ZP_05275245.1\| hypothetical protein LmonocytoFSL_08461 [Listeria monocytogenes FSL ... gi\|254879158 - gi\|254879158\|ref\|ZP_05251868.1\| hypothetical protein LmonFSL_08177 [Listeria monocytogenes FSL J2-07... gi\|254853955 - gi\|254853955\|ref\|ZP_05243303.1\| hypothetical protein LmonoFSL_11884 [Listeria monocytogenes FSL R2-5... gi\|254825361 - gi\|254825361\|ref\|ZP_05230362.1\| hypothetical protein LmonFS_09362 [Listeria monocytogenes FSL J1-194... gi\|153168622, gi... - gi\|153168622\|ref\|ZP_01928445.1\| conserved hypothetical protein [Listeria monocytogenes FSL N1-017], ... gi\|254932242, gi... - gi\|254932242\|ref\|ZP_05265601.1\| hypothetical protein LmonH_07419 [Listeria monocytogenes HPB2262], g...	242.0	[0..3]	[208..5]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFRTIKEDG QVQEEIKKSR FICHAKRVYS EEEARDFITA IKKEHYKATH NCSAFIIGER  60
   61 SEIKRTSDDG EPSGTAGVPM LGVLENHNLT NVCVVVTRYF GGIKLGAGGL IRAYAGSVAL 120
  121 AVKEIGIIEI KEQAGIAIQM SYAQYQEYSN FLKEHGLMEL DTNFTDQVDT MIYVDKEEKE 180
  181 TIKAALVEFF NGKVTLTDQG LREVEVPVNL V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	2cveA
Description:	Crystal structure of a conserved hypothetical protein TT1547 from thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.112026646106867	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: