YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25302346
Organism:	Streptococcus pneumoniae
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25302346.

Description	E-value	Query Range	Subject Range
gi\|242244451, gi... - gi\|242244451\|ref\|ZP_04798888.1\| ribose ABC superfamily ATP binding cassette transporter, membrane pr... gi\|25302348 - pir\|\|H98117 hypothetical protein fucU [imported] - Streptococcus pneumoniae (strain R6) gi\|237650658 - gi\|237650658\|ref\|ZP_04524910.1\| fucose operon FucU protein [Streptococcus pneumoniae CCRI 1974] gi\|15459672, gi\|... - gi\|15904012\|ref\|NP_359562.1\| fucose pathway protein, function unknown [Streptococcus pneumoniae R6],... gi\|237822213 - gi\|237822213\|ref\|ZP_04598058.1\| fucose operon FucU protein [Streptococcus pneumoniae CCRI 1974M2] gi\|168996145, gi... - gi\|169833643\|ref\|YP_001695520.1\| fucose operon FucU protein [Streptococcus pneumoniae Hungary19A-6],... gi\|220675332, gi... - gi\|221232870\|ref\|YP_002512024.1\| fuscose operon fucU protein [Streptococcus pneumoniae ATCC 700669],... gi\|168491694, gi... - gi\|183574054\|gb\|EDT94582.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC0288-04], gi\|168... gi\|183575903, gi... - gi\|183575903\|gb\|EDT96431.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC3059-06], gi\|168... gi\|147925616, gi... - gi\|148988805\|ref\|ZP_01820220.1\| L-fucose isomerase [Streptococcus pneumoniae SP6-BS73], gi\|147925616... gi\|172042686, gi... - gi\|172042686\|gb\|EDT50732.1\| fucose operon FucU protein [Streptococcus pneumoniae CDC1873-00], gi\|168... gi\|183572194, gi... - gi\|183572194\|gb\|EDT92722.1\| fucose operon FucU protein [Streptococcus pneumoniae SP195], gi\|16848923... gi\|116516128, gi... - gi\|116516128\|ref\|YP_817379.1\| RbsD/FucU transport protein family protein [Streptococcus pneumoniae D... gi\|147930755, gi... - gi\|149020077\|ref\|ZP_01835051.1\| L-fucose isomerase [Streptococcus pneumoniae SP23-BS72], gi\|14793075... gi\|147759016, gi... - gi\|149003013\|ref\|ZP_01827924.1\| L-fucose isomerase [Streptococcus pneumoniae SP14-BS69], gi\|14775901... gi\|148991983, gi... - gi\|148991983\|ref\|ZP_01821757.1\| RbsD/FucU transport protein family protein [Streptococcus pneumoniae... gi\|225857732, gi... - gi\|225857732\|ref\|YP_002739243.1\| fucose operon FucU protein [Streptococcus pneumoniae P1031], gi\|225... gi\|225861983, gi... - gi\|225861983\|ref\|YP_002743492.1\| fucose operon FucU protein [Streptococcus pneumoniae Taiwan19F-14],... gi\|225855658, gi... - gi\|225855658\|ref\|YP_002737170.1\| fucose operon FucU protein [Streptococcus pneumoniae JJA], gi\|22572...	206.0	[0..1]	[146..1]
gi\|80977860, gi\|... - gi\|81096081\|ref\|ZP_00874431.1\| RbsD or FucU transport [Streptococcus suis 89/1591], gi\|80977860\|gb\|E...	205.0	[0..1]	[146..1]
FUCM_ACTP7 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=fucU PE=3 SV=1 gi\|32034309 - gi\|32034309\|ref\|ZP_00134509.1\| COG4154: Fucose dissimilation pathway protein FucU [Actinobacillus pl... FUCM_ACTPJ - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=fucU PE=3 SV=1 FUCM_ACTP2 - L-fucose mutarotase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=fucU PE=3 SV=1	186.0	[0..1]	[141..1]
gi\|111658277, gi... - gi\|66878412\|ref\|ZP_00403894.1\| COG4154: Fucose dissimilation pathway protein FucU [Streptococcus pne...	186.0	[0..19]	[147..2]
gi\|37199108, gi\|... - gi\|37680361\|ref\|NP_934970.1\| fucose dissimilation pathway protein FucU [Vibrio vulnificus YJ016], gi...	186.0	[0..1]	[140..12]
gi\|91779231, gi\|... - gi\|91779231\|ref\|YP_554439.1\| RbsD or FucU transport [Burkholderia xenovorans LB400], gi\|91691891\|gb\|...	184.0	[0..1]	[147..1]
FUCM_HISS2 - L-fucose mutarotase OS=Histophilus somni (strain 2336) GN=fucU PE=3 SV=1	183.0	[0..1]	[141..1]
FUCM_HAES1 - L-fucose mutarotase OS=Haemophilus somnus (strain 129Pt) GN=fucU PE=3 SV=1	182.0	[0..1]	[141..1]
gi\|42629101 - gi\|42629101\|ref\|ZP_00154650.1\| COG4154: Fucose dissimilation pathway protein FucU [Haemophilus influ...	181.0	[0..1]	[141..1]
gi\|145642188, gi... - gi\|145642188\|ref\|ZP_01797756.1\| L-fucose isomerase [Haemophilus influenzae R3021], gi\|145273112\|gb\|E... FUCM_HAEIN, FUCU... - Fucose operon fucU protein - Haemophilus influenzae, L-fucose mutarotase OS=Haemophilus influenzae G... FUCM_HAEIG - L-fucose mutarotase OS=Haemophilus influenzae (strain PittGG) GN=fucU PE=3 SV=1 gi\|229811502, gi... - gi\|229845567\|ref\|ZP_04465694.1\| L-fuculose phosphate aldolase [Haemophilus influenzae 6P18H1], gi\|22... gi\|145642188 - gi\|145642188\|ref\|ZP_01797756.1\| L-fucose isomerase [Haemophilus influenzae R3021] gi\|145637753, gi... - gi\|145637753\|ref\|ZP_01793404.1\| ATP-dependent helicase HepA [Haemophilus influenzae PittHH], gi\|1452... gi\|144980186, gi... - gi\|145628411\|ref\|ZP_01784212.1\| L-fuculokinase [Haemophilus influenzae 22.1-21], gi\|144980186\|gb\|EDJ... FUCM_HAEIN - L-fucose mutarotase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fucU PE...	180.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKHIPKNIS PDLLKTLMEM GHGDEIVLAD ANYPSASCAN KLIRCDGVNI PELLDSILYL  60
   61 MPLDSYVDSS IQFMNVVSGD DIPKIWGTYR QMIEGHGTDL KTITYLRRED FYERSKKAYA 120
  121 IVATGETSLY ANIILKKGVV VERENVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	2ob5A
Description:	No description for 2ob5A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.00199656218015398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: