YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15901735, gi\|...
Organism:	Streptococcus pneumoniae TIGR4
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15901735, gi|....

Description	E-value	Query Range	Subject Range
gi\|147929763, gi... - gi\|149023440\|ref\|ZP_01836029.1\| hypothetical protein CGSSp23BS72_10103 [Streptococcus pneumoniae SP2... gi\|182630189, gi... - gi\|182684855\|ref\|YP_001836602.1\| hypothetical protein SPCG_1885 [Streptococcus pneumoniae CGSP14], g... gi\|225859676, gi... - gi\|225859676\|ref\|YP_002741186.1\| Putative tRNA binding domain protein [Streptococcus pneumoniae 7058... gi\|172041929, gi... - gi\|172041929\|gb\|EDT49975.1\| emap domain protein [Streptococcus pneumoniae CDC1873-00], gi\|168484919\|... gi\|225861703, gi... - gi\|225861703\|ref\|YP_002743212.1\| putative tRNA binding domain protein [Streptococcus pneumoniae Taiw... gi\|15459405, gi\|... - gi\|15903768\|ref\|NP_359318.1\| hypothetical protein spr1726 [Streptococcus pneumoniae R6], gi\|15459405... gi\|116515611, gi... - gi\|116515611\|ref\|YP_817139.1\| hypothetical protein SPD_1713 [Streptococcus pneumoniae D39], gi\|11607... gi\|242237310, gi... - gi\|242244190\|ref\|ZP_04798627.1\| phenylalanine--tRNA ligase beta subunit [Streptococcus pneumoniae TC... gi\|25305327 - pir\|\|D98087 conserved hypothetical protein spr1726 [imported] - Streptococcus pneumoniae (strain R6)	230.0	[0..1]	[208..1]
gi\|116106900, gi... - gi\|62463050\|ref\|ZP_00382405.1\| COG0073: EMAP domain [Lactococcus lactis subsp. cremoris SK11], gi\|11...	228.0	[0..1]	[208..1]
gi\|15672372, gi\|... - gi\|15672372\|ref\|NP_266546.1\| hypothetical protein L195751 [Lactococcus lactis subsp. lactis Il1403],... gi\|25305322 - pir\|\|F86673 hypothetical protein ydjD [imported] - Lactococcus lactis subsp. lactis (strain IL1403)	222.0	[0..1]	[208..1]
gi\|50590399, gi\|... - gi\|81176905\|ref\|ZP_00875867.1\| t-RNA-binding region [Streptococcus suis 89/1591], gi\|80976347\|gb\|EAP...	221.0	[0..1]	[206..1]
gi\|134271225, gi... - gi\|139472979\|ref\|YP_001127694.1\| putative tRNA-binding protein [Streptococcus pyogenes str. Manfredo... gi\|94543120, gi\|... - gi\|94989612\|ref\|YP_597712.1\| tRNA-binding domain-containing protein [Streptococcus pyogenes MGAS1027... gi\|50913496, gi\|... - gi\|50913496\|ref\|YP_059468.1\| tRNA-binding domain-containing protein [Streptococcus pyogenes MGAS1039...	221.0	[0..1]	[206..1]
gi\|56807744 - gi\|56807744\|ref\|ZP_00365607.1\| COG0073: EMAP domain [Streptococcus pyogenes M49 591]	220.0	[0..1]	[206..1]
gi\|19747393, gi\|... - gi\|19747393\|gb\|AAL96930.1\| hypothetical protein spyM18_0119 [Streptococcus pyogenes MGAS8232], gi\|19... gi\|28895006, gi\|... - gi\|28895006\|ref\|NP_801356.1\| hypothetical protein SPs0094 [Streptococcus pyogenes SSI-1], gi\|2881025... gi\|21903810, gi\|... - gi\|21909628\|ref\|NP_663896.1\| hypothetical protein SpyM3_0092 [Streptococcus pyogenes MGAS315], gi\|21...	220.0	[0..1]	[206..1]
gi\|71902765, gi\|... - gi\|71902765\|ref\|YP_279568.1\| tRNA-binding domain-containing protein [Streptococcus pyogenes MGAS6180...	220.0	[0..1]	[206..1]
gi\|71909915, gi\|... - gi\|71909915\|ref\|YP_281465.1\| tRNA-binding domain-containing protein [Streptococcus pyogenes MGAS5005...	218.0	[0..1]	[206..1]
gi\|94993504, gi\|... - gi\|94993504\|ref\|YP_601602.1\| tRNA binding domain protein [Streptococcus pyogenes MGAS10750], gi\|9454...	218.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFTYNKEHV GDVLMVIVKN SGDAKLDVER KGKVARVFLK DNGETVAWNI FEVSSLFEIA  60
   61 ERGQVFLTDE QVARLNQELQ AEGFTEEIVN DKEPKFVVGE IVEMVAHPDS DHLNICQVAV 120
  121 ASDKTVQIVA GAPNARVGLK TIVALPGAMM PKGNLIFPGE LRGEKSFGMM CSPRELHLPN 180
  181 APQKRGVLEL SEDQVVGTPF DPAKHWTA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1rqgA
Description:	Methionyl-tRNA synthetase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits