YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15901726, gi\|...
Organism:	Streptococcus pneumoniae TIGR4
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15901726, gi|....

Description	E-value	Query Range	Subject Range
gi\|25509235 - pir\|\|H98085 hypothetical protein msmR [imported] - Streptococcus pneumoniae (strain R6) gi\|116077109, gi... - gi\|116516533\|ref\|YP_817128.1\| msm operon regulatory protein MsmR [Streptococcus pneumoniae D39], gi\|... gi\|15903756, gi\|... - gi\|15903756\|ref\|NP_359306.1\| MSM (multiple sugar metabolism) operon regulatory protein [Streptococcu... gi\|182630177, gi... - gi\|182684843\|ref\|YP_001836590.1\| msm operon regulatory protein [Streptococcus pneumoniae CGSP14], gi...	193.0	[0..1]	[286..1]
gi\|50590983, gi\|... - gi\|81097031\|ref\|ZP_00875347.1\| Helix-turn-helix, AraC type:Arac protein, arabinose-binding/dimerisat...	172.0	[0..3]	[278..6]
MSMR_STRMU - Msm operon regulatory protein OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=msm... MSMR_STRMU - Msm operon regulatory protein OS=Streptococcus mutans GN=msmR PE=4 SV=2 gi\|254997563 - gi\|254997563\|dbj\|BAH88164.1\| putative MSM operon regulatory protein [Streptococcus mutans NN2025]	169.0	[0..3]	[277..6]
gi\|455363 - gi\|455363\|gb\|AAA26932.1\| regulatory protein [Streptococcus mutans]	169.0	[0..3]	[277..6]
gi\|66970520, gi\|... - gi\|67078214\|ref\|YP_245834.1\| MSM (multiple sugar metabolism) operon regulatory protein [Bacillus cer...	169.0	[0..3]	[277..7]
gi\|69244853, gi\|... - gi\|69244853\|ref\|ZP_00603077.1\| Helix-turn-helix, AraC type:Arac protein, arabinose-binding/dimerisat... gi\|48826084 - ref\|ZP_00287312.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Enterococcus faecium]	165.0	[0..1]	[278..5]
gi\|22074768 - gi\|22074768\|gb\|AAM26296.1\| lactose operon transcriptional activator [Staphylococcus carnosus]	165.0	[0..3]	[275..5]
gi\|196198353, gi... - gi\|196252220\|ref\|ZP_03150881.1\| transcriptional regulator, AraC family [Clostridium thermocellum DSM... gi\|125974697, gi... - gi\|67875295\|ref\|ZP_00504718.1\| Helix-turn-helix, AraC type [Clostridium thermocellum ATCC 27405], gi...	156.0	[0..14]	[276..23]
gi\|15614792, gi\|... - gi\|15614792\|ref\|NP_243095.1\| AraC/XylS family transcriptional regulator [Bacillus halodurans C-125],... gi\|25494967 - pir\|\|E83928 transcription regulator (AraC/XylS family) BH2229 [imported] - Bacillus halodurans (stra...	155.0	[0..1]	[283..1]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVFSEYQTG TIDLALSFYG YEECTPNYSF GPAIRDTYVL HYITKGQGKF HYKGKIVDLK  60
   61 EGDFFLLKPE ELTFYQADSK EPWAYYWLGI TGGKAPDYFA L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	2f4pA
Description:	Crystal structure of hypothetical protein (tm1010) from THERMOTOGA MARITIMA at 1.90 A resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [102-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQISDQSYLI QSETCHTQTT AKLISDIVRF AQITKSSELA QLHIMGQLHE LMFHLGTIAP  60
   61 NQKKKNISST HQLYLECKRL IDSHYPQSLT IQDLAKELSV HRSYLSSVFK EFNTLSPKEY 120
  121 LLYVRMHRAR QLLENTQESI KVIAYSVGFS DPLHFSKAYK QYFNQTPSHT RKEYSQYQLV 180
  181 RKATL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.0
Match:	1wpkA
Description:	Methylated Form of N-terminal Transcriptional Regulator Domain of Escherichia Coli Ada Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits