YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15901504, gi\|...
Organism:	Streptococcus pneumoniae TIGR4
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15901504, gi|....

Description	E-value	Query Range	Subject Range
gi\|47566814, gi\|... - gi\|47566814\|ref\|ZP_00237532.1\| MutT/nudix family protein [Bacillus cereus G9241], gi\|47556443\|gb\|EAL...	176.0	[0..3]	[203..2]
gi\|42737104, gi\|... - gi\|42781182\|ref\|NP_978429.1\| mutT/nudix family protein [Bacillus cereus ATCC 10987], gi\|42737104\|gb\|...	175.0	[0..3]	[198..2]
gi\|228593282, gi... - gi\|229190165\|ref\|ZP_04317168.1\| MutT/nudix [Bacillus cereus ATCC 10876], gi\|228593282\|gb\|EEK51098.1\|... gi\|229144676, gi... - gi\|229144676\|ref\|ZP_04273077.1\| MutT/nudix [Bacillus cereus BDRD-ST24], gi\|228638808\|gb\|EEK95237.1\| ... gi\|30020169, gi\|... - gi\|30020169\|ref\|NP_831800.1\| phosphohydrolase (MutT/nudix family protein) [Bacillus cereus ATCC 1457... gi\|229127468, gi... - gi\|229127468\|ref\|ZP_04256461.1\| MutT/nudix [Bacillus cereus BDRD-Cer4], gi\|228656009\|gb\|EEL11854.1\| ... gi\|228807230, gi... - gi\|228952444\|ref\|ZP_04114526.1\| MutT/nudix [Bacillus thuringiensis serovar kurstaki str. T03a001], g... gi\|206972166, gi... - gi\|206972166\|ref\|ZP_03233114.1\| mutT/nudix family protein [Bacillus cereus AH1134], gi\|206733089\|gb\|...	174.0	[0..3]	[203..2]
gi\|49481573, gi\|... - gi\|49481573\|ref\|YP_036194.1\| MutT/NUDIX family hydrolase [Bacillus thuringiensis serovar konkukian s...	173.0	[0..3]	[203..2]
gi\|218897038, gi... - gi\|218897038\|ref\|YP_002445449.1\| mutT/nudix family protein [Bacillus cereus G9842], gi\|218540757\|gb\|... gi\|228859001, gi... - gi\|228900656\|ref\|ZP_04064876.1\| MutT/nudix [Bacillus thuringiensis IBL 4222], gi\|228859001\|gb\|EEN034... gi\|228965054, gi... - gi\|228965054\|ref\|ZP_04126151.1\| MutT/nudix [Bacillus thuringiensis serovar sotto str. T04001], gi\|22... gi\|74490847, gi\|... - gi\|75761662\|ref\|ZP_00741609.1\| Phosphohydrolase (MutT/nudix family protein) [Bacillus thuringiensis ...	172.0	[0..3]	[203..2]
gi\|52143382, gi\|... - gi\|52143382\|ref\|YP_083447.1\| MutT/NUDIX family hydrolase [Bacillus cereus E33L], gi\|51976851\|gb\|AAU1...	172.0	[0..3]	[203..2]
gi\|41583437, gi\|... - gi\|42519150\|ref\|NP_965080.1\| hypothetical protein LJ1225 [Lactobacillus johnsonii NCC 533], gi\|41583...	171.0	[0..3]	[200..2]
gi\|167632741, gi... - gi\|167632741\|ref\|ZP_02391067.1\| mutT/nudix family protein [Bacillus anthracis str. A0442], gi\|167531... gi\|167513776, gi... - gi\|167638475\|ref\|ZP_02396752.1\| mutT/nudix family protein [Bacillus anthracis str. A0193], gi\|167513... gi\|170686366, gi... - gi\|170686366\|ref\|ZP_02877587.1\| mutT/nudix family protein [Bacillus anthracis str. A0465], gi\|170669... gi\|170706078, gi... - gi\|170706078\|ref\|ZP_02896540.1\| mutT/nudix family protein [Bacillus anthracis str. A0389], gi\|170129... gi\|177650892, gi... - gi\|177650892\|ref\|ZP_02933789.1\| mutT/nudix family protein [Bacillus anthracis str. A0174], gi\|172083... gi\|190567868, gi... - gi\|190567868\|ref\|ZP_03020779.1\| mutT/nudix family protein [Bacillus anthracis Tsiankovskii-I], gi\|19... gi\|49178839, gi\|... - gi\|49184912\|ref\|YP_028164.1\| mutT/nudix family protein [Bacillus anthracis str. Sterne], gi\|49178839... gi\|47527337, gi\|... - gi\|47527337\|ref\|YP_018686.1\| mutT/nudix family protein [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30262072, gi\|... - gi\|30262072\|ref\|NP_844449.1\| mutT/nudix family protein [Bacillus anthracis str. Ames], gi\|30256698\|g... gi\|65319356, gi\|... - gi\|65319356\|ref\|ZP_00392315.1\| COG1051: ADP-ribose pyrophosphatase [Bacillus anthracis str. A2012], ... gi\|165870231, gi... - gi\|165870231\|ref\|ZP_02214887.1\| mutT/nudix family protein [Bacillus anthracis str. A0488], gi\|164714... gi\|254758270 - gi\|254758270\|ref\|ZP_05210297.1\| mutT/nudix family protein [Bacillus anthracis str. Australia 94] gi\|254751398 - gi\|254751398\|ref\|ZP_05203435.1\| mutT/nudix family protein [Bacillus anthracis str. Vollum] gi\|254739442 - gi\|254739442\|ref\|ZP_05197141.1\| mutT/nudix family protein [Bacillus anthracis str. Kruger B] gi\|254737082 - gi\|254737082\|ref\|ZP_05194786.1\| mutT/nudix family protein [Bacillus anthracis str. Western North Ame... gi\|254684638 - gi\|254684638\|ref\|ZP_05148498.1\| mutT/nudix family protein [Bacillus anthracis str. CNEVA-9066] gi\|229267373, gi... - gi\|229602965\|ref\|YP_002866435.1\| MutT/NUDIX family protein [Bacillus anthracis str. A0248], gi\|22926... gi\|227005303, gi... - gi\|227815132\|ref\|YP_002815141.1\| mutT/nudix family protein [Bacillus anthracis str. CDC 684], gi\|227...	170.0	[0..3]	[203..2]
gi\|116077127, gi... - gi\|116516551\|ref\|YP_816938.1\| MutT/nudix family protein [Streptococcus pneumoniae D39], gi\|116077127... gi\|25509092 - pir\|\|H98060 mutator protein [imported] - Streptococcus pneumoniae (strain R6) gi\|15903556, gi\|... - gi\|15903556\|ref\|NP_359106.1\| MutT/nudix family protein [Streptococcus pneumoniae R6], gi\|15459175\|gb...	167.0	[0..1]	[203..1]
gi\|89153276, gi\|... - gi\|89208807\|ref\|ZP_01187293.1\| NUDIX hydrolase [Bacillus weihenstephanensis KBAB4], gi\|89153276\|gb\|E...	167.0	[0..3]	[203..2]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSDFVKYL QRMIAITDTG LTFTKDPFDR ERYEDLRSLL SEMLNQASDL DSEEVAEVLK  60
   61 PTSAYATPLM DVRAWIVEDE KICLVRGQGE DSWALPGGFG EVGYSPTENI LKEIEEETGF 120
  121 KAKVERLLAV FDTNRFQLQS KQYTKFVFGC KLLDGQFQEN QEIADLQFFA IDQLPNLSEK 180
  181 RITKEQIELL WQVYQGHRGQ YLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1vk6A
Description:	Crystal structure of NADH pyrophosphatase (1790429) from Escherichia coli k12 at 2.20 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits