YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25335042
Organism:	Streptococcus pneumoniae
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25335042.

Description	E-value	Query Range	Subject Range
gi\|170717260, gi... - gi\|53728545\|ref\|ZP_00132342.2\| COG4283: Uncharacterized conserved protein [Haemophilus somnus 2336],...	250.0	[0..1]	[172..1]
gi\|25335044 - pir\|\|G97976 conserved hypothetical protein spr0839 [imported] - Streptococcus pneumoniae (strain R6) gi\|15458441, gi\|... - gi\|15902883\|ref\|NP_358433.1\| hypothetical protein spr0839 [Streptococcus pneumoniae R6], gi\|15458441... gi\|182629217, gi... - gi\|182683883\|ref\|YP_001835630.1\| hypothetical protein SPCG_0913 [Streptococcus pneumoniae CGSP14], g... gi\|111658122 - gi\|111658122\|ref\|ZP_01408820.1\| hypothetical protein SpneT_02000688 [Streptococcus pneumoniae TIGR4]	249.0	[0..1]	[172..10]
gi\|77411090, gi\|... - gi\|77411090\|ref\|ZP_00787443.1\| conserved hypothetical protein [Streptococcus agalactiae CJB111], gi\|...	249.0	[0..1]	[172..1]
gi\|76787481, gi\|... - gi\|76787481\|ref\|YP_329347.1\| hypothetical protein SAK_0719 [Streptococcus agalactiae A909], gi\|76562...	248.0	[0..1]	[172..1]
gi\|115250892, gi... - gi\|126699455\|ref\|YP_001088352.1\| hypothetical protein CD1846 [Clostridium difficile 630], gi\|1152508...	247.0	[0..1]	[172..1]
gi\|25010680, gi\|... - gi\|25010680\|ref\|NP_735075.1\| hypothetical protein gbs0616 [Streptococcus agalactiae NEM316], gi\|2309... gi\|76787351, gi\|... - gi\|76787351\|ref\|YP_329396.1\| hypothetical protein SAK_0769 [Streptococcus agalactiae A909], gi\|76562... gi\|77411251, gi\|... - gi\|77411251\|ref\|ZP_00787601.1\| Unknown [Streptococcus agalactiae CJB111], gi\|77162677\|gb\|EAO73638.1\|... gi\|77173651, gi\|... - gi\|77407785\|ref\|ZP_00784539.1\| Unknown [Streptococcus agalactiae COH1], gi\|77173651\|gb\|EAO76766.1\| U...	247.0	[0..1]	[172..1]
gi\|76799172, gi\|... - gi\|76799172\|ref\|ZP_00781354.1\| conserved hypothetical protein [Streptococcus agalactiae 18RS21], gi\|... gi\|22536809, gi\|... - gi\|22536809\|ref\|NP_687660.1\| hypothetical protein SAG0636 [Streptococcus agalactiae 2603V/R], gi\|225...	246.0	[0..1]	[172..1]
gi\|112823317, gi... - gi\|113461274\|ref\|YP_719343.1\| hypothetical protein HS_1131 [Haemophilus somnus 129PT], gi\|112823317\|...	245.0	[0..1]	[172..1]
gi\|48825281 - ref\|ZP_00286546.1\| COG4283: Uncharacterized conserved protein [Enterococcus faecium] gi\|68195440, gi\|... - gi\|69246068\|ref\|ZP_00603795.1\| conserved hypothetical protein [Enterococcus faecium DO], gi\|68195440...	240.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTYENKEEL KAEIEKTFEK YILEFDNIPE NLKDKRADEV DRTPAENLAY QVGWTNLVLK  60
   61 WEEDERKGLQ VKTPSDKFKW NQLGELYQWF TDTYAHLSLQ ELKAKLNENI NSISAMIDSL 120
  121 SEEELFEPHM RKWADEATKT ATWEVYKFIH VNTVAPFGTF RTKIRKWKKI VL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.66
Match:	1rxqA
Description:	YfiT from Bacillus subtilis is a probable metal-dependent hydrolase with an unusual four-helix bundle topology
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits