YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15900115, gi\|...
Organism:	Streptococcus pneumoniae TIGR4
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15900115, gi|....

Description	E-value	Query Range	Subject Range
gi\|182683162, gi... - gi\|182683162\|ref\|YP_001834909.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CGSP... gi\|183577789, gi... - gi\|183577789\|gb\|EDT98317.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae MLV-016],... gi\|147757179, gi... - gi\|148996604\|ref\|ZP_01824322.1\| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP11-BS7... gi\|116076349, gi... - gi\|116515773\|ref\|YP_815688.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39], g... gi\|25331496 - pir\|\|D97892 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) [imported] - Streptococ... gi\|15902208, gi\|... - gi\|15902208\|ref\|NP_357758.1\| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae R6], gi\|...	388.0	[0..1]	[366..1]
gi\|126207866, gi... - gi\|126207866\|ref\|YP_001053091.1\| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae L2... gi\|1173516, gi\|1... - gi\|1173516\|gb\|AAA86522.1\| riboflavin-specific deaminase, gi\|11280415\|pir\|\|T50546 riboflavin bifuncti...	385.0	[0..1]	[362..47]
gi\|46143613 - gi\|46143613\|ref\|ZP_00134868.2\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Actinobacillu...	381.0	[0..1]	[362..1]
gi\|111657939 - gi\|111657939\|ref\|ZP_01408648.1\| hypothetical protein SpneT_02000888 [Streptococcus pneumoniae TIGR4]	378.0	[0..7]	[366..1]
gi\|77638394, gi\|... - gi\|77685795\|ref\|ZP_00801179.1\| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C...	375.0	[0..3]	[361..2]
gi\|33148497, gi\|... - gi\|33152274\|ref\|NP_873627.1\| riboflavin biosynthesis protein RibD [Haemophilus ducreyi 35000HP], gi\|...	373.0	[0..1]	[359..1]
gi\|75176888, gi\|... - gi\|75176888\|ref\|ZP_00697004.1\| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Shigella boyd...	367.0	[0..1]	[356..1]
gi\|77410804, gi\|... - gi\|77410804\|ref\|ZP_00787162.1\| riboflavin biosynthesis protein RibD [Streptococcus agalactiae CJB111...	366.0	[0..1]	[359..2]
gi\|77406006, gi\|... - gi\|77406006\|ref\|ZP_00783084.1\| riboflavin biosynthesis protein RibD [Streptococcus agalactiae H36B],... gi\|22533761, gi\|... - gi\|22536910\|ref\|NP_687761.1\| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 2603V/R]... gi\|76788660, gi\|... - gi\|76788660\|ref\|YP_329494.1\| riboflavin biosynthesis protein RibD [Streptococcus agalactiae A909], g...	366.0	[0..1]	[359..2]

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Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKYMKLA IKLAQKGAGY VNPNPMVGAV IVKDNHIIGQ GYHEFFGGPH AERNALKNCR  60
   61 ESPVGATLYV TLEPCCHFGK TPPCIDAIID SGITRVVIGS LDCNPIVSGK GVKILEENNL 120
  121 QVTVGILENE CLNLIKSFRK YITQHVPYVF MKYAMSMDGK IATKTNQSKW ITEEEARKHV 180
  181 HQLRHHVSAI MVGVNTVIQD DPLLTCRLEE GKNPIRIICD THLRTPLTSK IVKTANDIKT 240
  241 YIATSSEDKN KMKLYQNHGC EILSIKKKGN HIDLSSLMQH LGNMQIDSLV LEGGSLMNWS 300
  301 ALEQQIVDEL KIYIAPKVFG GSAKFPVGGE GISLPNDAIR LKPYAFSQIG NDYLIESEVI 360
  361 YPCSQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2g6vA
Description:	No description for 2g6vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits