YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55249693, gi\|...
Organism:	Rattus norvegicus
Length:	292 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55249693, gi|....

Description	E-value	Query Range	Subject Range
gi\|114599953 - gi\|114599953\|ref\|XP_517728.2\| PREDICTED: cyclin B1 [Pan troglodytes]	262.0	[0..3]	[289..253]
gi\|1665741 - gi\|1665741\|dbj\|BAA11560.1\| cyclin [Adiantum capillus-veneris]	258.0	[0..10]	[284..252]
gi\|7271222 - gi\|7271222\|emb\|CAB81558.1\| cyclin B1 [Nicotiana tabacum]	256.0	[0..5]	[289..140]
gi\|60655945 - gi\|60655945\|gb\|AAX32536.1\| cyclin B1 [synthetic construct]	256.0	[0..3]	[289..150]
gi\|1835260 - gi\|1835260\|emb\|CAA99990.1\| mitotic cyclin [Sesbania rostrata]	256.0	[0..8]	[285..173]
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1 gi\|123990181 - gi\|123990181\|gb\|ABM83901.1\| cyclin B1 [synthetic construct]	255.0	[0..3]	[289..150]
gi\|38014678, gi\|... - gi\|38014678\|gb\|AAH60466.1\| MGC68601 protein [Xenopus laevis], gi\|148222908\|ref\|NP_001083368.1\| hypot...	254.0	[0..3]	[289..111]
gi\|89272831 - gi\|89272831\|emb\|CAJ83630.1\| cyclin B2 [Xenopus tropicalis]	254.0	[0..3]	[280..109]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLCCEGTR HAPRAGPDPR LLGDQRVLQS LLRLEERYVP RASYFQCVQK EIKPHMRKML  60
   61 AYWMLEVCEE QRCEEDVFPL AMNYLDRYLS CVPTRKAQLQ LLGTVCLLLA SKLRETTPLT 120
  121 IEKLCIYTDQ AVAPWQLREW EVLVLGKLKW DLAAVIAHDF LALILHRLSL PSDRQALVKK 180
  181 HAQTFLALCA TDYTFAMYPP SMIATGSIGA AVLGLGACSM SADELTELLA GITGTEVDCL 240
  241 RACQEQIEAA LRESLREAAQ TAPSPVPKAP RGSSSQGPSQ TSTPTDVTAI HL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	2jgzB
Description:	No description for 2jgzB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits