YRC Public Data Repository - Protein Structure Prediction

Protein:	MSHB_MYCTU
Organism:	Mycobacterium tuberculosis
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSHB_MYCTU.

Description	E-value	Query Range	Subject Range
MSHB_MYCLB - 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase OS=Mycobacterium leprae (str... MSHB_MYCLE - 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase OS=Mycobacterium leprae (str... MSHB_MYCLE - 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase OS=Mycobacterium leprae GN=m...	269.0	[0..1]	[296..1]
MCA_STRCO - Mycothiol S-conjugate amidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=mca...	263.0	[0..1]	[300..1]
gi\|29606950, gi\|... - gi\|29829841\|ref\|NP_824475.1\| hypothetical protein SAV_3299 [Streptomyces avermitilis MA-4680], gi\|29...	261.0	[0..1]	[297..1]
gi\|42543421, gi\|... - gi\|42543422\|pdb\|1Q7T\|B Chain B, Rv1170 (Mshb) From Mycobacterium Tuberculosis, gi\|42543421\|pdb\|1Q7T\|...	249.0	[0..1]	[303..26]
gi\|62389878, gi\|... - gi\|62389878\|ref\|YP_225280.1\| hypothetical protein cg1127 [Corynebacterium glutamicum ATCC 13032], gi...	246.0	[0..5]	[300..7]
gi\|23492890, gi\|... - gi\|25027608\|ref\|NP_737662.1\| hypothetical protein CE1052 [Corynebacterium efficiens YS-314], gi\|2349...	244.0	[0..5]	[300..4]
gi\|38199783 - gi\|38199783\|emb\|CAE49446.1\| Conserved hypothetical protein [Corynebacterium diphtheriae] gi\|38233523 - gi\|38233523\|ref\|NP_939290.1\| hypothetical protein DIP0927 [Corynebacterium diphtheriae NCTC 13129]	242.0	[0..1]	[300..4]
gi\|71914585, gi\|... - gi\|72160853\|ref\|YP_288510.1\| hypothetical protein Tfu_0449 [Thermobifida fusca YX], gi\|71914585\|gb\|A...	242.0	[0..1]	[298..1]
gi\|113902591, gi... - gi\|145593483\|ref\|YP_001157780.1\| LmbE family protein [Salinispora tropica CNB-440], gi\|145302820\|gb\|...	235.0	[0..1]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETPRLLFV HAHPDDESLS NGATIAHYTS RGAQVHVVTC TLGEEGEVIG DRWAQLTADH  60
   61 ADQLGGYRIG ELTAALRALG VSAPIYLGGA GRWRDSGMAG TDQRSQRRFV DADPRQTVGA 120
  121 LVAIIRELRP HVVVTYDPNG GYGHPDHVHT HTVTTAAVAA AGVGSGTADH PGDPWTVPKF 180
  181 YWTVLGLSAL ISGARALVPD DLRPEWVLPR ADEIAFGYSD DGIDAVVEAD EQARAAKVAA 240
  241 LAAHATQVVV GPTGRAAALS NNLALPILAD EHYVLAGGSA GARDERGWET DLLAGLGFTA 300
  301 SGT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.154902
Match:	1q7tA
Description:	Rv1170 (MshB) from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits