YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29610974, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29610974, gi|....

Description	E-value	Query Range	Subject Range
gi\|6580638, gi\|2... - gi\|6580638\|emb\|CAB63173.1\| putative cytochrome B subunit [Streptomyces coelicolor A3(2)], gi\|2121944...	213.0	[0..1]	[235..9]
gi\|53798217 - ref\|ZP_00358786.1\| COG1704: Uncharacterized conserved protein [Chloroflexus aurantiacus] gi\|76261586, gi\|... - gi\|76261586\|ref\|ZP_00769191.1\| Succinate dehydrogenase, cytochrome b558 subunit [Chloroflexus aurant... gi\|222449170, gi... - gi\|222525291\|ref\|YP_002569762.1\| succinate dehydrogenase (or fumarate reductase) cytochrome b subuni...	177.0	[0..16]	[235..6]
gi\|86569010, gi\|... - gi\|86742148\|ref\|YP_482548.1\| succinate dehydrogenase subunit C [Frankia sp. CcI3], gi\|86569010\|gb\|AB...	176.0	[0..2]	[234..13]
gi\|72162852, gi\|... - gi\|72162852\|ref\|YP_290509.1\| succinate dehydrogenase subunit C [Thermobifida fusca YX], gi\|71916584\|...	171.0	[0..1]	[234..1]
gi\|62389268, gi\|... - gi\|62389268\|ref\|YP_224670.1\| succinate dehydrogenase Cd [Corynebacterium glutamicum ATCC 13032], gi\|...	170.0	[0..23]	[235..31]
gi\|68537023, gi\|... - gi\|68537023\|ref\|YP_251728.1\| succinate dehydrogenase subunit [Corynebacterium jeikeium K411], gi\|682...	168.0	[0..18]	[234..26]
gi\|45657854, gi\|... - gi\|45657854\|ref\|YP_001940.1\| succinate dehydrogenase cytochrome B subunit [Leptospira interrogans se... gi\|24195569, gi\|... - gi\|24214598\|ref\|NP_712079.1\| cytochrome B subunit [Leptospira interrogans serovar Lai str. 56601], g...	166.0	[0..19]	[234..9]
gi\|113938965, gi... - gi\|159898258\|ref\|YP_001544505.1\| succinate dehydrogenase/fumarate reductase cytochrome b subunit [He...	165.0	[0..19]	[234..9]
gi\|25026942, gi\|... - gi\|25026942\|ref\|NP_736996.1\| putative succinate dehydrogenase subunit C [Corynebacterium efficiens Y...	164.0	[0..23]	[235..31]
gi\|113942561, gi... - gi\|145594255\|ref\|YP_001158552.1\| succinate dehydrogenase/fumarate reductase cytochrome b subunit [Sa...	164.0	[0..12]	[234..2]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALATRTDRR SSMARTVWDS SVGKKTVMAV SGLVMLLYLV VHMIGNLKIF FGSGEFNHYA  60
   61 HWLRTLGEPF LHYEWALWII RVALVAAVVA HATAAYQLSR RDIRARPSKY VHRKARASYA 120
  121 TRTMRWGGVI LGLFIVWHIL DLTTGSVHPG GFQSGHPYQN VVDTFSTWYG NIIYIVAMLA 180
  181 LGLHIRHGFW SAAQTLGAGS RTRDRALKTV ANVLALLLTA GFVAVPVGVM TGVVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2bs2C
Description:	No description for 2bs2C was found.

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.6133558935785	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	8.00052083671124	bayes_pls_golite062009
oxidoreductase activity	5.99989196344185	bayes_pls_golite062009
electron carrier activity	4.50772505551128	bayes_pls_golite062009
catalytic activity	0.971825536251904	bayes_pls_golite062009
binding	0.105562378964133	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: