YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29610664, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	233 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29610664, gi|....

Description	E-value	Query Range	Subject Range
gi\|21219866, gi\|... - gi\|21219866\|ref\|NP_625645.1\| hypothetical protein SCO1361 [Streptomyces coelicolor A3(2)], gi\|131221...	226.0	[0..8]	[232..7]
gi\|13471749, gi\|... - gi\|14022493\|dbj\|BAB49102.1\| mll1820 [Mesorhizobium loti MAFF303099], gi\|13471749\|ref\|NP_103316.1\| hy...	223.0	[0..9]	[231..8]
gi\|27352417, gi\|... - gi\|27379266\|ref\|NP_770795.1\| hypothetical protein blr4155 [Bradyrhizobium japonicum USDA 110], gi\|27...	216.0	[0..14]	[230..4]
gi\|83575637, gi\|... - gi\|83592723\|ref\|YP_426475.1\| hypothetical protein Rru_A1387 [Rhodospirillum rubrum ATCC 11170], gi\|8... gi\|48764810 - ref\|ZP_00269361.1\| COG3467: Predicted flavin-nucleotide-binding protein [Rhodospirillum rubrum]	215.0	[0..13]	[233..1]
RPA1393 - RPA1393 conserved hypothetical protein 1538532:1539338 forward MW:30728	210.0	[0..10]	[231..46]
gi\|75701880, gi\|... - gi\|75908155\|ref\|YP_322451.1\| hypothetical protein Ava_1934 [Anabaena variabilis ATCC 29413], gi\|7570...	209.0	[0..22]	[231..7]
gi\|17232229, gi\|... - gi\|17232229\|ref\|NP_488777.1\| hypothetical protein all4737 [Nostoc sp. PCC 7120], gi\|17133874\|dbj\|BAB... gi\|25535560 - pir\|\|AI2397 hypothetical protein all4737 [imported] - Nostoc sp. (strain PCC 7120)	205.0	[0..22]	[230..7]
gi\|23105712, gi\|... - gi\|67155571\|ref\|ZP_00417199.1\| conserved hypothetical protein [Azotobacter vinelandii AvOP], ref\|ZP_... gi\|226946905, gi... - gi\|67155571\|ref\|ZP_00417199.1\| conserved hypothetical protein [Azotobacter vinelandii AvOP], gi\|6708...	205.0	[0..13]	[230..2]
gi\|94969812, gi\|... - gi\|94969812\|ref\|YP_591860.1\| hypothetical protein Acid345_2785 [Candidatus Koribacter versatilis Ell...	198.0	[0..23]	[231..5]
gi\|148257725, gi... - gi\|78694795\|ref\|ZP_00859308.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851791...	198.0	[0..13]	[233..1]

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Predicted Domain #1

Region A:
Residues: [1-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESAMPETST QPGTTQPAAY TPTDRTVPTR SRERAAYDHE LVHAILDEGY VCHLGFVRDG  60
   61 APVVLPTLYG RVGRRLYVHG STGSRPLRMT GQADPGLPVC LTVTHVDGLV LARSAFHHSL 120
  121 NYRSVVVHGI AHQVTDPDEK REALDALVDH VVPGRSYDSR PANAKELAAT AVISLDLDEV 180
  181 SAKLRTGGPN DEPEDLTLPH WTGVLPLTRG YGAPVPAADL APGIELPDYL AAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	2furA
Description:	Crystal structure of hypothetical protein 10640715 from Thermoplasma acidophilum at 1.80 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.130848055218245	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: