YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29610648, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29610648, gi|....

Description	E-value	Query Range	Subject Range
gi\|21219886, gi\|... - gi\|7649593\|emb\|CAB88878.1\| conserved hypothetical protein [Streptomyces coelicolor A3(2)], gi\|212198...	222.0	[0..1]	[157..1]
gi\|71915532, gi\|... - gi\|72161800\|ref\|YP_289457.1\| hypothetical protein Tfu_1396 [Thermobifida fusca YX], gi\|71915532\|gb\|A...	215.0	[0..1]	[153..1]
gi\|22299584, gi\|... - gi\|22299584\|ref\|NP_682831.1\| hypothetical protein tlr2041 [Thermosynechococcus elongatus BP-1], gi\|2...	207.0	[0..1]	[152..3]
gi\|81299880, gi\|... - gi\|81299880\|ref\|YP_400088.1\| hypothetical protein Synpcc7942_1071 [Synechococcus elongatus PCC 7942]...	206.0	[0..2]	[152..24]
gi\|71674953, gi\|... - gi\|71674953\|ref\|ZP_00672699.1\| Protein of unknown function DUF151 [Trichodesmium erythraeum IMS101],...	206.0	[0..1]	[152..1]
gi\|67854249, gi\|... - gi\|67923897\|ref\|ZP_00517354.1\| Protein of unknown function DUF151 [Crocosphaera watsonii WH 8501], g...	205.0	[0..1]	[152..1]
gi\|186680609, gi... - gi\|23126334\|ref\|ZP_00108233.1\| COG1259: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	205.0	[0..1]	[152..1]
gi\|23821221 - gi\|23821221\|emb\|CAD52979.1\| hypothetical protein [Rhodococcus fascians]	204.0	[0..1]	[152..1]
gi\|75907637, gi\|... - gi\|75907637\|ref\|YP_321933.1\| hypothetical protein Ava_1415 [Anabaena variabilis ATCC 29413], gi\|7570...	204.0	[0..1]	[152..1]
gi\|152967038, gi... - gi\|69284790\|ref\|ZP_00616522.1\| Protein of unknown function DUF151 [Kineococcus radiotolerans SRS3021...	204.0	[0..1]	[156..1]

Back

Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELDVVGVR VEMPSNQPIV LLREVGGDRY LPIWIGPGEA TAIAFAQQGM APARPLTHDL  60
   61 FKDVLEAVGQ ELTEVRITDL REGVFYAELV FASGVEVSAR PSDAIALALR TGTPIYGSDG 120
  121 VLDDAGIAIP DEQEDEVEKF REFLDQISPE DFGTNSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1vjlA
Description:	CRYSTAL STRUCTURE OF PREDICTED PROTEIN RELATED TO WOUND INDUCIVE PROTEINS IN PLANTS (TM0160) FROM THERMOTOGA MARITIMA AT 1.90 A RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits