YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29830959, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29830959, gi|....

Description	E-value	Query Range	Subject Range
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	222.0	[0..22]	[240..5]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	221.0	[0..18]	[247..9]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	221.0	[0..18]	[247..1]
gi\|25300922 - pir\|\|G97109 response regulator (CheY-like receiver domain and DNA-binding HTH domain) [imported] - C... gi\|15894977, gi\|... - gi\|15894977\|ref\|NP_348326.1\| response regulator [Clostridium acetobutylicum ATCC 824], gi\|15024664\|g...	220.0	[0..18]	[240..1]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	218.0	[0..18]	[241..1]
gi\|220931316, gi... - gi\|89209804\|ref\|ZP_01188198.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	218.0	[0..17]	[246..1]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	217.0	[0..18]	[241..1]
gi\|82502198 - gi\|82502198\|gb\|ABB80126.1\| SubR [Bacillus subtilis]	217.0	[0..22]	[247..5]
gi\|6687469 - gi\|6687469\|emb\|CAB64972.1\| VicR protein [Enterococcus faecalis]	217.0	[0..21]	[246..51]
gi\|77996843, gi\|... - gi\|78044728\|ref\|YP_360866.1\| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-290...	217.0	[0..21]	[243..1]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQPYEFRGA EAVERGAGAG ARVLVVDDDP TVAEVVSGYL DRAGYVVDRA EDGPTALARA  60
   61 AAHWPDLVVL DLMLPGMDGL EVCRRMRGRG PVPVIMLTAR GDEDDRILGL EVGADDYVTK 120
  121 PFSPRELVLR VESVLRRTRP VTAPRPLHAS GLALDPAARR ATKDGEELAL TIREFDLLAF 180
  181 FLRHPGRAFS REDLMREVWG WDFGDLSTVT VHVRRLRGKV EDDPARPRLI QTVWGVGYRF 240
  241 GTTPRQEAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits