YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29607500, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29607500, gi|....

Description	E-value	Query Range	Subject Range
gi\|32141235, gi\|... - gi\|32141235\|ref\|NP_733636.1\| formyltetrahydrofolate deformylase [Streptomyces coelicolor A3(2)], gi\|...	330.0	[0..1]	[293..1]
gi\|119375107, gi... - gi\|69936296\|ref\|ZP_00631122.1\| Formyltetrahydrofolate deformylase [Paracoccus denitrificans PD1222],...	322.0	[0..12]	[292..1]
gi\|83360838, gi\|... - gi\|83369484\|ref\|ZP_00914338.1\| Formyltetrahydrofolate deformylase [Rhodobacter sphaeroides ATCC 1702...	322.0	[0..12]	[292..1]
gi\|187479291, gi... - gi\|187479291\|ref\|YP_787316.1\| formyltetrahydrofolate deformylase [Bordetella avium 197N], gi\|1154238...	322.0	[0..10]	[292..1]
gi\|68346410, gi\|... - gi\|70732111\|ref\|YP_261867.1\| formyltetrahydrofolate deformylase [Pseudomonas fluorescens Pf-5], gi\|6...	321.0	[0..8]	[292..9]
gi\|25286221, gi\|... - pir\|\|AF2879 formyltetrahydrofolate deformylase [imported] - Agrobacterium tumefaciens (strain C58, D... gi\|17740955, gi\|... - gi\|17936346\|ref\|NP_533136.1\| formyltetrahydrofolate deformylase [Agrobacterium tumefaciens str. C58]...	318.0	[0..12]	[292..1]
gi\|117927364, gi... - gi\|88932266\|ref\|ZP_01137958.1\| Formyltetrahydrofolate deformylase [Acidothermus cellulolyticus 11B],...	318.0	[0..12]	[292..1]
gi\|83723946, gi\|... - gi\|83749369\|ref\|ZP_00946364.1\| Formyltetrahydrofolate deformylase [Ralstonia solanacearum UW551], gi...	318.0	[0..9]	[292..27]
gi\|114767063, gi... - gi\|114767063\|ref\|ZP_01445960.1\| formyltetrahydrofolate deformylase protein [Roseovarius sp. HTCC2601...	317.0	[0..12]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEQSVRAAA PAEQYVLTLS CPDKQGIVHA VSSYLFMTGC NIEDSQQFGD HDTGLFFMRV  60
   61 HFSAEAPVTV EKLRASFTAI GDAFHMDWQI HRAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.39794
Match:	1zpvA
Description:	ACT domain protein from Streptococcus pneumoniae
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [95-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRMRVVLMVS KFGHCLNDLL FRARTGALPV EIAAVVSNHT DFAELVASYD IPFHHIPVTR  60
   61 DNKAEAEAQL LELVRSENIE LVVLARYMQV LSDDLCKQLS GRIINIHHSF LPSFKGAKPY 120
  121 HQAHARGVKL IGATAHYVTA DLDEGPIIEQ EVERVGHDVT PDQLVAIGRD VECQALARAV 180
  181 KWHAERRILL NGRRTVVFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.69897
Match:	1zlxA
Description:	The apo structure of human glycinamide ribonucleotide transformylase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits