YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29828391, gi\|...
Organism:	Streptomyces avermitilis MA-4680
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29828391, gi|....

Description	E-value	Query Range	Subject Range
gi\|23097990, gi\|... - gi\|23097990\|ref\|NP_691456.1\| oxidoreductase [Oceanobacillus iheyensis HTE831], gi\|22776214\|dbj\|BAC12...	331.0	[0..5]	[276..1]
gi\|56963875, gi\|... - gi\|56963875\|ref\|YP_175606.1\| oxidoreductase [Bacillus clausii KSM-K16], gi\|56910118\|dbj\|BAD64645.1\| ...	329.0	[0..5]	[276..1]
gi\|68055006, gi\|... - gi\|68055006\|ref\|ZP_00539155.1\| 2,5-didehydrogluconate reductase [Exiguobacterium sibiricum 255-15], ...	324.0	[0..5]	[275..1]
gi\|56378939, gi\|... - gi\|56419097\|ref\|YP_146415.1\| plant-metabolite dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56...	324.0	[0..1]	[277..1]
gi\|89097650, gi\|... - gi\|89097650\|ref\|ZP_01170538.1\| YvgN [Bacillus sp. NRRL B-14911], gi\|89087509\|gb\|EAR66622.1\| YvgN [Ba...	315.0	[0..3]	[277..4]
gi\|7481096 - pir\|\|T34993 probable oxidoreductase - Streptomyces coelicolor gi\|4007669, gi\|2... - gi\|4007669\|emb\|CAA22355.1\| putative oxidoreductase [Streptomyces coelicolor A3(2)], gi\|21224853\|ref\|...	315.0	[0..1]	[276..1]
gi\|51974866, gi\|... - gi\|52141397\|ref\|YP_085433.1\| aldo/keto reductase family oxidoreductase [Bacillus cereus E33L], gi\|51...	313.0	[0..2]	[276..37]
gi\|65321490 - gi\|65321490\|ref\|ZP_00394449.1\| COG0656: Aldo/keto reductases, related to diketogulonate reductase [B...	312.0	[0..2]	[276..22]
gi\|48870271, gi\|... - gi\|48870271\|ref\|ZP_00322996.1\| COG0656: Aldo/keto reductases, related to diketogulonate reductase [P...	311.0	[0..1]	[277..1]
gi\|70879327 - gi\|70879327\|gb\|EAN92511.1\| prostaglandin F synthase, putative [Trypanosoma cruzi] gi\|71651365 - gi\|71651365\|ref\|XP_814362.1\| prostaglandin F synthase [Trypanosoma cruzi strain CL Brener]	309.0	[0..1]	[275..1]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKVPPITL NNGVEMPQLG FGVWQVPDDE AERAVATALE AGYRSIDTAA IYGNEEGTGK  60
   61 AIATAGIPRA DLFVTTKLWN SDQGYDSTLR AFDVSLEKLG LDYIDLYLIH WPLPTRGQFV 120
  121 ETYKAFEKIY ADGRAKAIGV SNFLPEHLRT LIDATSVIPA VNQIELHPHL QQHAAREFHA 180
  181 EHGIATEAWS PLGSGKGLLE VPAIVAIARK HERTPAQVVL RWHIQLGNIV IPKSVTPSRI 240
  241 KENIEVFDFS LDDEDIAAIS ALNEDRRLGP DPATFDMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.69897
Match:	1vbjA
Description:	The crystal structure of prostaglandin F synthase from Trypanosoma brucei
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits