YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55380234, gi\|...
Organism:	Haloarcula marismortui ATCC 43049
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55380234, gi|....

Description	E-value	Query Range	Subject Range
gi\|20905935, gi\|... - gi\|21227554\|ref\|NP_633476.1\| universal stress protein [Methanosarcina mazei Go1], gi\|20905935\|gb\|AAM...	229.0	[0..3]	[287..11]
gi\|55229429, gi\|... - gi\|55376704\|ref\|YP_134555.1\| universal stress protein [Haloarcula marismortui ATCC 43049], gi\|552294...	221.0	[0..1]	[285..1]
gi\|109625657, gi... - gi\|110667910\|ref\|YP_657721.1\| stress response protein [Haloquadratum walsbyi DSM 16790], gi\|10962565...	212.0	[0..1]	[285..1]
gi\|56964964, gi\|... - gi\|56964964\|ref\|YP_176695.1\| hypothetical protein ABC3200 [Bacillus clausii KSM-K16], gi\|56911207\|db...	201.0	[0..1]	[291..1]
gi\|83756959, gi\|... - gi\|83815565\|ref\|YP_446095.1\| universal stress protein [Salinibacter ruber DSM 13855], gi\|83756959\|gb...	195.0	[0..2]	[291..34]
gi\|119767435, gi... - gi\|68548184\|ref\|ZP_00587699.1\| UspA [Shewanella amazonensis SB2B], gi\|68514129\|gb\|EAN37875.1\| UspA [...	191.0	[0..2]	[293..4]
gi\|127512922, gi... - gi\|78367942\|ref\|ZP_00838199.1\| UspA [Shewanella sp. PV-4], gi\|78360023\|gb\|EAP01868.1\| UspA [Shewanel...	190.0	[0..2]	[293..4]
SO2355 - universal stress protein family gi\|24373902, gi\|... - gi\|24373902\|ref\|NP_717945.1\| universal stress protein UspE [Shewanella oneidensis MR-1], gi\|24348324...	188.0	[0..2]	[293..4]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYDTILFPTD GSNAAESVLE YALQIASEHE ATIHILNVAD TGRDSVTTIR GEVIDVLETE  60
   61 GERIVAEATQ YAKDEGVPVV SAVLQGDPHK TIVDYSQQSD SDCIVMPTHG QRGIQRILLG 120
  121 SVTERVINTA EVPVIAVNPD RDRPLVYPPQ HVLVPTDGSR GADLALTEGI AVARATDATL 180
  181 HLLHVVETGG LGPDARSVLK EGELTERANE IMAGATEKID DTSLDTVTSV IEHGDPSKVI 240
  241 CDYIDENEVD LAVMGTHGQT DFSRYVMGGV SAKLVRKSPV PVTWVREPES ASDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	2jaxA
Description:	No description for 2jaxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits