YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55229429, gi\|...
Organism:	Haloarcula marismortui ATCC 43049
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55229429, gi|....

Description	E-value	Query Range	Subject Range
gi\|20905935, gi\|... - gi\|21227554\|ref\|NP_633476.1\| universal stress protein [Methanosarcina mazei Go1], gi\|20905935\|gb\|AAM...	243.0	[0..3]	[291..11]
gi\|55380234, gi\|... - gi\|55380234\|ref\|YP_138083.1\| universal stress protein 1 [Haloarcula marismortui ATCC 43049], gi\|5523...	225.0	[0..1]	[299..1]
gi\|56964964, gi\|... - gi\|56964964\|ref\|YP_176695.1\| hypothetical protein ABC3200 [Bacillus clausii KSM-K16], gi\|56911207\|db...	205.0	[0..1]	[296..1]
gi\|127512922, gi... - gi\|78367942\|ref\|ZP_00838199.1\| UspA [Shewanella sp. PV-4], gi\|78360023\|gb\|EAP01868.1\| UspA [Shewanel...	204.0	[0..2]	[298..4]
gi\|119767435, gi... - gi\|68548184\|ref\|ZP_00587699.1\| UspA [Shewanella amazonensis SB2B], gi\|68514129\|gb\|EAN37875.1\| UspA [...	200.0	[0..2]	[298..4]
gi\|83756959, gi\|... - gi\|83815565\|ref\|YP_446095.1\| universal stress protein [Salinibacter ruber DSM 13855], gi\|83756959\|gb...	199.0	[0..2]	[296..34]
SO2355 - universal stress protein family gi\|24373902, gi\|... - gi\|24373902\|ref\|NP_717945.1\| universal stress protein UspE [Shewanella oneidensis MR-1], gi\|24348324...	196.0	[0..2]	[298..4]
gi\|109625657, gi... - gi\|110667910\|ref\|YP_657721.1\| stress response protein [Haloquadratum walsbyi DSM 16790], gi\|10962565...	196.0	[0..1]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDSILVPTD GSEHATRAAE HGAALARAFS ASLHVMAVID TRTAGGPFSG GDLEDETLDR  60
   61 MTADAEDTVT AITDAVDAAG AIQTTIRTGN PADEICAYRD DHDIDLIAMG THGRTGVGRY 120
  121 LAGSVTESVV RHADVPVFTV RATEQSRKTD SYDDILVPTD GSTAATAAVE PACEIAAQFD 180
  181 SRLHALNVVN LGDVATGSEY TLPTDLIDTL EAQGEKVTER IAARARESGV ETVTQVVDGF 240
  241 PAADILDYAE ENDIDLIVMG TAGRTGLNRF IMGSTTERLI RHADMPVLAV NARDQRVAEA 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	2jaxA
Description:	No description for 2jaxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits