YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55376572, gi\|...
Organism:	Haloarcula marismortui ATCC 43049
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55376572, gi|....

Description	E-value	Query Range	Subject Range
gi\|2822350, gi\|1... - gi\|2822350\|gb\|AAC82856.1\| unknown [Halobacterium sp. NRC-1], gi\|16120057\|ref\|NP_395645.1\| hypothetic... gi\|7484056 - pir\|\|T08289 conserved hypothetical protein H0801 - Halobacterium sp. (strain NRC-1) plasmid pNRC100	284.0	[0..1]	[228..10]
gi\|17230686, gi\|... - gi\|17230686\|ref\|NP_487234.1\| hypothetical protein all3194 [Nostoc sp. PCC 7120], gi\|17132289\|dbj\|BAB... gi\|25347072 - pir\|\|AC2205 hypothetical protein all3194 [imported] - Nostoc sp. (strain PCC 7120)	267.0	[0..1]	[222..1]
gi\|71741915, gi\|... - gi\|71837633\|ref\|ZP_00677397.1\| Protein of unknown function DUF159 [Pelobacter propionicus DSM 2379],...	266.0	[0..1]	[227..1]
gi\|186683677, gi... - gi\|53686882\|ref\|ZP_00106310.2\| COG2135: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	266.0	[0..1]	[225..1]
gi\|45508692, gi\|... - gi\|75910096\|ref\|YP_324392.1\| hypothetical protein Ava_3892 [Anabaena variabilis ATCC 29413], gi\|7570...	264.0	[0..1]	[222..1]
gi\|221314277 - gi\|221314277\|ref\|ZP_03596082.1\| hypothetical protein BsubsN3_11232 [Bacillus subtilis subsp. subtili... gi\|221319199 - gi\|221319199\|ref\|ZP_03600493.1\| hypothetical protein BsubsJ_11158 [Bacillus subtilis subsp. subtilis... YOQW_BACSU - UPF0361 protein yoqW OS=Bacillus subtilis GN=yoqW PE=3 SV=1 YOQW_BPSPB - Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 YOQW_BACSU - Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 gi\|221323475 - gi\|221323475\|ref\|ZP_03604769.1\| hypothetical protein BsubsS_11287 [Bacillus subtilis subsp. subtilis...	264.0	[0..1]	[214..1]
gi\|56379871, gi\|... - gi\|56420029\|ref\|YP_147347.1\| hypothetical protein GK1494 [Geobacillus kaustophilus HTA426], gi\|56379...	261.0	[0..1]	[218..1]
gi\|56475513, gi\|... - gi\|56475513\|ref\|YP_157102.1\| hypothetical protein ebA145 [Aromatoleum aromaticum EbN1], gi\|56311556\|...	259.0	[0..1]	[224..1]
gi\|77165214, gi\|... - gi\|77165214\|ref\|YP_343739.1\| hypothetical protein Noc_1737 [Nitrosococcus oceani ATCC 19707], gi\|768... gi\|207089951 - gi\|207089951\|gb\|EDZ67222.1\| conserved hypothetical protein [Nitrosococcus oceani AFC27] gi\|254433618, gi... - gi\|254433618\|ref\|ZP_05047126.1\| conserved hypothetical protein [Nitrosococcus oceani AFC27], gi\|2244...	259.0	[0..1]	[216..1]
gi\|89097945, gi\|... - gi\|89097945\|ref\|ZP_01170832.1\| hypothetical protein B14911_23437 [Bacillus sp. NRRL B-14911], gi\|890...	257.0	[0..2]	[219..23]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGRNSLFID QADLEARFDA EVVTDGGYTP RYNIAPGDDL HIVTNEAPDE IEAYHWGLIP  60
   61 FWADEPEEGI INARSETADE KRVFEQAWET RPCLVPSSGF YEWKSPNGGS KQPYRIFRED 120
  121 DPAFAMAGLW DVWEGDDETI SCVTILTTEP NDLMNSIHDR MPVVLPKDAE SDWLAADPDT 180
  181 RNELCQPYPK DDLDAYEIST RVNNPGNGDP QIIERLDHEQ SGLGEFSSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.154902
Match:	2icuA
Description:	No description for 2icuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits