YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15924579, gi\|...
Organism:	Staphylococcus aureus subsp. aureus Mu50
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15924579, gi|....

Description	E-value	Query Range	Subject Range
gi\|49241965, gi\|... - gi\|49483836\|ref\|YP_041060.1\| putative deaminase [Staphylococcus aureus subsp. aureus MRSA252], gi\|49...	175.0	[0..1]	[153..1]
gi\|25290264 - pir\|\|F83816 late competence operon required for DNA binding and uptake comEB [imported] - Bacillus h... gi\|15613897, gi\|... - gi\|15613897\|ref\|NP_242200.1\| late competence operon required for DNA binding and uptake [Bacillus ha...	173.0	[0..1]	[143..1]
gi\|57637709, gi\|... - gi\|57867051\|ref\|YP_188732.1\| comE operon protein 2 [Staphylococcus epidermidis RP62A], gi\|57637709\|g... gi\|27315739, gi\|... - gi\|27468193\|ref\|NP_764830.1\| putative dCMP deaminase [Staphylococcus epidermidis ATCC 12228], gi\|273...	172.0	[0..1]	[152..1]
gi\|70726327, gi\|... - gi\|70726327\|ref\|YP_253241.1\| late competence operon required for DNA binding and uptake [Staphylococ...	172.0	[0..1]	[151..1]
gi\|72494993, gi\|... - gi\|73662478\|ref\|YP_301259.1\| putative dCMP deaminase [Staphylococcus saprophyticus subsp. saprophyti...	171.0	[0..1]	[152..1]
gi\|52786486, gi\|... - gi\|52786486\|ref\|YP_092315.1\| hypothetical protein BLi02751 [Bacillus licheniformis ATCC 14580], gi\|5... gi\|18266365 - gi\|18266365\|gb\|AAL67525.1\|AF459916_2 late competence protein ComEB [Bacillus licheniformis]	166.0	[0..1]	[152..1]
gi\|152025508, gi... - gi\|89203490\|ref\|ZP_01182148.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Bacillus cer...	165.0	[0..1]	[152..1]
gi\|29897962, gi\|... - gi\|30022404\|ref\|NP_834035.1\| ComE operon protein 2 [Bacillus cereus ATCC 14579], gi\|29897962\|gb\|AAP1...	163.0	[0..1]	[147..1]
gi\|56909655, gi\|... - gi\|56963412\|ref\|YP_175143.1\| late competence protein ComEB [Bacillus clausii KSM-K16], gi\|56909655\|d...	161.0	[0..1]	[148..1]
gi\|56380893, gi\|... - gi\|56421051\|ref\|YP_148369.1\| late competence protein (DNA binding and uptake) [Geobacillus kaustophi...	160.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERIKWEEYF MAQSHLLALR STCQRLSVGA TIVKDNRIIA GGYNGSVAGE VHCIDEGCLI  60
   61 EDGHCIRTIH AEMNALLQCA KQGVSTEGAT IYVTHFPCLN CTKSIIQAGI KRIYYAEDYH 120
  121 NHEYATKLLK QSGIEFKKIP FSPEYVAKYL TKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	2hvvA
Description:	No description for 2hvvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits