YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49244825, gi\|...
Organism:	Staphylococcus aureus subsp. aureus MSSA476
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49244825, gi|....

Description	E-value	Query Range	Subject Range
gi\|25489859 - pir\|\|E83829 hypothetical protein BH1437 [imported] - Bacillus halodurans (strain C-125) gi\|10174054, gi\|... - gi\|15614000\|ref\|NP_242303.1\| hypothetical protein BH1437 [Bacillus halodurans C-125], gi\|10174054\|db...	151.0	[0..1]	[108..252]
gi\|73662519, gi\|... - gi\|73662519\|ref\|YP_301300.1\| hypothetical protein SSP1210 [Staphylococcus saprophyticus subsp. sapro...	144.0	[0..1]	[108..1]
gi\|242233719, gi... - gi\|242242818\|ref\|ZP_04797263.1\| protein of hypothetical function DUF77 [Staphylococcus epidermidis W... gi\|251805472, gi... - gi\|251810962\|ref\|ZP_04825435.1\| protein of hypothetical function DUF77 [Staphylococcus epidermidis B... gi\|57637729, gi\|... - gi\|57867071\|ref\|YP_188687.1\| hypothetical protein SERP1111 [Staphylococcus epidermidis RP62A], gi\|57... gi\|27315696, gi\|... - gi\|27468150\|ref\|NP_764787.1\| hypothetical protein SE1232 [Staphylococcus epidermidis ATCC 12228], gi...	144.0	[0..1]	[107..1]
DGLA_STAXY - UPF0045 protein in glkA 3'region OS=Staphylococcus xylosus GN=dglA PE=3 SV=1	142.0	[0..1]	[106..1]
gi\|82656680, gi\|... - gi\|82751149\|ref\|YP_416890.1\| hypothetical protein SAB1418c [Staphylococcus aureus RF122], gi\|8265668...	137.0	[0..1]	[109..1]
gi\|68447095, gi\|... - gi\|70726371\|ref\|YP_253285.1\| hypothetical protein SH1370 [Staphylococcus haemolyticus JCSC1435], gi\|...	136.0	[0..1]	[107..1]
gi\|56963504, gi\|... - gi\|56963504\|ref\|YP_175235.1\| hypothetical protein ABC1739 [Bacillus clausii KSM-K16], gi\|56909747\|db...	134.0	[0..1]	[101..249]
gi\|52081015, gi\|... - gi\|52786392\|ref\|YP_092221.1\| YqgV [Bacillus licheniformis ATCC 14580], gi\|52348894\|gb\|AAU41528.1\| Yq...	134.0	[0..1]	[103..1]
gi\|83574227, gi\|... - gi\|83591313\|ref\|YP_431322.1\| hypothetical protein Moth_2497 [Moorella thermoacetica ATCC 39073], gi\|...	134.0	[0..1]	[103..1]
gi\|7450728 - pir\|\|S74554 hypothetical protein sll0230 - Synechocystis sp. (strain PCC 6803) Y230_SYNY3 - UPF0045 protein sll0230 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0230 PE=3 SV=1 Y230_SYNY3 - UPF0045 protein sll0230 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=sll0230 PE=3 SV...	132.0	[0..2]	[105..23]

Back

Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIVDVVVIP VGTEGPSVSK YIADIQKKLQ EYKAMGKIDF QLTPMNTLIE GELSDVLEVV  60
   61 QVIHELPFDK GLSRVCTNIR IDDRRDKSRK MNDKLTSVQK HLENSGENL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1lxnA
Description:	Hypothetical protein MTH1187
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits