YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13700450, gi\|...
Organism:	Staphylococcus aureus subsp. aureus N315
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13700450, gi|....

Description	E-value	Query Range	Subject Range
gi\|116184449 - gi\|116184449\|ref\|ZP_01474386.1\| hypothetical protein VEx2w_02003038 [Vibrio sp. Ex25]	198.0	[0..3]	[155..30]
gi\|49482788, gi\|... - gi\|49482788\|ref\|YP_040012.1\| putative deaminase [Staphylococcus aureus subsp. aureus MRSA252], gi\|49... gi\|227246210, gi... - gi\|227557392\|ref\|ZP_03987439.1\| deaminase [Staphylococcus aureus subsp. aureus MN8], gi\|227246210\|gb... gi\|227899450, gi... - gi\|227899450\|ref\|ZP_04017255.1\| deaminase [Staphylococcus aureus subsp. aureus TCH60], gi\|227852213\|...	194.0	[0..1]	[156..1]
gi\|68448159, gi\|... - gi\|70727433\|ref\|YP_254349.1\| hypothetical protein SH2434 [Staphylococcus haemolyticus JCSC1435], gi\|...	194.0	[0..1]	[156..1]
gi\|88192205, gi\|... - gi\|88192208\|pdb\|2B3J\|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase,... gi\|88192205, gi\|... - gi\|88192208\|pdb\|2B3J\|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase,...	194.0	[0..1]	[156..4]
gi\|90438699, gi\|... - gi\|90579814\|ref\|ZP_01235622.1\| Putative cytosine/adenosine deaminase [Vibrio angustum S14], gi\|90438...	193.0	[0..3]	[154..9]
gi\|77809323, gi\|... - gi\|77815675\|ref\|ZP_00814899.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella p...	193.0	[0..4]	[154..9]
gi\|16761480 - gi\|16761480\|ref\|NP_457097.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... TADA_SALTI - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Salmonella typhi gi\|16421115, gi\|... - gi\|16765888\|ref\|NP_461503.1\| tRNA-specific adenosine deaminase [Salmonella typhimurium LT2], gi\|1642... TADA_SALTY - tRNA-specific adenosine deaminase (EC 3.5.4.-) - Salmonella typhimurium gi\|29136448, gi\|... - gi\|29140823\|ref\|NP_804165.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... gi\|62181133, gi\|... - gi\|62181133\|ref\|YP_217550.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=yfhC] [protein=tRNA-specific adenosine deaminase] [protein_id=YP_005238675.1] [location=comple... gi\|16503780, gi\|... - gi\|25303877\|pir\|\|AF0827 conserved hypothetical protein STY2814 [imported] - Salmonella enterica subs... gi\|224582890, gi... - gi\|224582890\|ref\|YP_002636688.1\| hypothetical protein SPC_1081 [Salmonella enterica subsp. enterica ...	193.0	[0..3]	[154..18]
gi\|197361490, gi... - gi\|197361490\|ref\|YP_002141126.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enter... gi\|56126812, gi\|... - gi\|56412555\|ref\|YP_149630.1\| tRNA-specific adenosine deaminase [Salmonella enterica subsp. enterica ...	192.0	[0..3]	[154..18]
gi\|126175184, gi... - gi\|68543670\|ref\|ZP_00583366.1\| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella b...	192.0	[0..3]	[154..12]
gi\|73663465, gi\|... - gi\|73663465\|ref\|YP_302246.1\| putative cytosine adenosine deaminase [Staphylococcus saprophyticus sub...	191.0	[0..1]	[153..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNDIYFMTL AIEEAKKAAQ LGEVPIGAII TKDDEVIARA HNLRETLQQP TAHAEHIAIE  60
   61 RAAKVLGSWR LEGCTLYVTL EPCVMCAGTI VMSRIPRVVY GADDPKGGCS GSLMNLLQQS 120
  121 NFNHRAIVDK GVLKEACSTL LTTFFKNLRA NKKSTN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.09691
Match:	2b3jA
Description:	Crystal Structure of Staphylococcus aureus tRNA Adenosine Deaminase, TadA, in Complex with RNA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.07800438828306	bayes_pls_golite062009
methyltransferase activity	1.73753215913649	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.66914541186463	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	0.516651342237498	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.385948807040181	bayes_pls_golite062009
hydrolase activity	0.34203636465094	bayes_pls_golite062009
transferase activity	0.268221683084535	bayes_pls_golite062009
deaminase activity	0.100786900220128	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: