YRC Public Data Repository - Protein Structure Prediction

Protein:	RL10_STAAR
Organism:	Staphylococcus aureus subsp. aureus MRSA252
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL10_STAAR.

Description	E-value	Query Range	Subject Range
RL10_STAAS - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MSSA476) GN=rplJ PE=3 SV=1	180.0	[0..1]	[166..1]
gi\|229329198, gi... - gi\|229499919\|ref\|ZP_04393596.1\| ribosomal protein L10 [Geobacillus sp. Y412MC52], gi\|229329198\|gb\|EE... gi\|220706737, gi... - gi\|221089311\|ref\|ZP_03558831.1\| ribosomal protein L10 [Geobacillus sp. Y412MC61], gi\|220706737\|gb\|EE... RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus (strain HTA426) GN=rplJ PE=3 SV=1 RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus GN=rplJ PE=3 SV=1	179.0	[0..1]	[164..1]
gi\|242241871, gi... - gi\|242241871\|ref\|ZP_04796316.1\| 50S ribosomal protein L10 [Staphylococcus epidermidis W23144], gi\|24... gi\|251809956, gi... - gi\|251809956\|ref\|ZP_04824429.1\| 50S ribosomal protein L10 [Staphylococcus epidermidis BCM-HMP0060], ... RL10_STAEP - (Q8CTT2) 50S ribosomal protein L10 RL10_STAES - 50S ribosomal protein L10 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplJ PE=3 SV=1 RL10_STAEQ - 50S ribosomal protein L10 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplJ PE=3 SV=...	176.0	[0..1]	[166..1]
RL10_OCEIH - 50S ribosomal protein L10 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT... RL10_OCEIH - 50S ribosomal protein L10 OS=Oceanobacillus iheyensis GN=rplJ PE=3 SV=1	175.0	[0..1]	[164..1]
gi\|52078598, gi\|... - gi\|52078598\|ref\|YP_077389.1\| 50S ribosomal protein L10 [Bacillus licheniformis ATCC 14580], gi\|52001...	175.0	[0..1]	[164..9]
gi\|49183133, gi\|... - gi\|49183133\|ref\|YP_026385.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Sterne], gi\|49177060... gi\|228634924, gi... - gi\|229148508\|ref\|ZP_04276764.1\| 50S ribosomal protein L10 [Bacillus cereus m1550], gi\|228634924\|gb\|E... RL10_BACHK - 50S ribosomal protein L10 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rplJ PE=3 SV=... gi\|228629558, gi... - gi\|229153877\|ref\|ZP_04282007.1\| 50S ribosomal protein L10 [Bacillus cereus ATCC 4342], gi\|228629558\|... RL10_BACC1 - 50S ribosomal protein L10 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rplJ PE=3 SV=1 gi\|229136945, gi... - gi\|229136945\|ref\|ZP_04265572.1\| 50S ribosomal protein L10 [Bacillus cereus BDRD-ST26], gi\|228646483\|... gi\|47525354, gi\|... - gi\|47525354\|ref\|YP_016703.1\| 50S ribosomal protein L10 [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|229142905, gi... - gi\|229142905\|ref\|ZP_04271346.1\| 50S ribosomal protein L10 [Bacillus cereus BDRD-ST24], gi\|228640526\|... gi\|228595058, gi... - gi\|229188384\|ref\|ZP_04315432.1\| 50S ribosomal protein L10 [Bacillus cereus ATCC 10876], gi\|228595058... gi\|30260290, gi\|... - gi\|30260290\|ref\|NP_842667.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Ames], gi\|30253611\|g... RL10_BACAN - 50S ribosomal protein L10 OS=Bacillus anthracis GN=rplJ PE=3 SV=1 gi\|229194489, gi... - gi\|229194489\|ref\|ZP_04321292.1\| 50S ribosomal protein L10 [Bacillus cereus m1293], gi\|228588955\|gb\|E... RL10_BACHK - 50S ribosomal protein L10 OS=Bacillus thuringiensis subsp. konkukian GN=rplJ PE=3 SV=1 gi\|228606742, gi... - gi\|229176699\|ref\|ZP_04304103.1\| 50S ribosomal protein L10 [Bacillus cereus 172560W], gi\|228606742\|gb... gi\|228600948, gi... - gi\|229182493\|ref\|ZP_04309744.1\| 50S ribosomal protein L10 [Bacillus cereus BGSC 6E1], gi\|228600948\|g... gi\|254733746 - gi\|254733746\|ref\|ZP_05191461.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Western North Ame... gi\|254739415 - gi\|254739415\|ref\|ZP_05197115.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Kruger B] RL10_BACAA - 50S ribosomal protein L10 OS=Bacillus anthracis (strain A0248) GN=rplJ PE=3 SV=1 gi\|254684397 - gi\|254684397\|ref\|ZP_05148257.1\| 50S ribosomal protein L10 [Bacillus anthracis str. CNEVA-9066] RL10_BACCZ - 50S ribosomal protein L10 OS=Bacillus cereus (strain ZK / E33L) GN=rplJ PE=3 SV=1 gi\|254751212 - gi\|254751212\|ref\|ZP_05203250.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Vollum] gi\|254756811 - gi\|254756811\|ref\|ZP_05208839.1\| 50S ribosomal protein L10 [Bacillus anthracis str. Australia 94] RL10_BACC4 - 50S ribosomal protein L10 OS=Bacillus cereus (strain B4264) GN=rplJ PE=3 SV=1 gi\|228912838, gi... - gi\|228912838\|ref\|ZP_04076485.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar pulsiensis... RL10_BACC7 - 50S ribosomal protein L10 OS=Bacillus cereus (strain AH187) GN=rplJ PE=3 SV=1 gi\|228919049, gi... - gi\|228919049\|ref\|ZP_04082428.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar huazhongen... RL10_BACCQ - 50S ribosomal protein L10 OS=Bacillus cereus (strain Q1) GN=rplJ PE=3 SV=1 RL10_BACC3 - 50S ribosomal protein L10 OS=Bacillus cereus (strain 03BB102) GN=rplJ PE=3 SV=1 RL10_BACC0 - 50S ribosomal protein L10 OS=Bacillus cereus (strain AH820) GN=rplJ PE=3 SV=1 RL10_BACAC - 50S ribosomal protein L10 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplJ PE=3 SV=1 gi\|228815738, gi... - gi\|228943905\|ref\|ZP_04106290.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar monterrey ... gi\|228950647, gi... - gi\|228950647\|ref\|ZP_04112781.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar kurstaki s... gi\|206732822, gi... - gi\|206972248\|ref\|ZP_03233195.1\| 50S ribosomal protein L10 [Bacillus cereus AH1134], gi\|206732822\|gb\|... gi\|228834274, gi... - gi\|228925352\|ref\|ZP_04088448.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar pondicheri... gi\|167636700, gi... - gi\|167636700\|ref\|ZP_02394987.1\| ribosomal protein L10 [Bacillus anthracis str. A0442], gi\|167527874\|... gi\|228931601, gi... - gi\|228931601\|ref\|ZP_04094507.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar andalousie... gi\|228727301, gi... - gi\|229041004\|ref\|ZP_04189767.1\| 50S ribosomal protein L10 [Bacillus cereus AH676], gi\|228727301\|gb\|E... gi\|228715223, gi... - gi\|229067864\|ref\|ZP_04201181.1\| 50S ribosomal protein L10 [Bacillus cereus F65185], gi\|228715223\|gb\|... gi\|228956540, gi... - gi\|228956540\|ref\|ZP_04118336.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar pakistani ... gi\|228776344, gi... - gi\|228983354\|ref\|ZP_04143567.1\| 50S ribosomal protein L10 [Bacillus thuringiensis serovar tochigiens... gi\|228675634, gi... - gi\|229107785\|ref\|ZP_04237421.1\| 50S ribosomal protein L10 [Bacillus cereus Rock1-15], gi\|228675634\|g... gi\|229119761, gi... - gi\|229119761\|ref\|ZP_04249022.1\| 50S ribosomal protein L10 [Bacillus cereus 95/8201], gi\|228663662\|gb... gi\|229077396, gi... - gi\|229077396\|ref\|ZP_04210054.1\| 50S ribosomal protein L10 [Bacillus cereus Rock4-2], gi\|228705915\|gb... gi\|229089230, gi... - gi\|229089230\|ref\|ZP_04220511.1\| 50S ribosomal protein L10 [Bacillus cereus Rock3-42], gi\|228694069\|g...	174.0	[0..1]	[164..1]
RL10_STAHJ - 50S ribosomal protein L10 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplJ PE=3 SV=1	174.0	[0..1]	[166..1]
RL10_BACSK - 50S ribosomal protein L10 OS=Bacillus clausii (strain KSM-K16) GN=rplJ PE=3 SV=1	174.0	[0..1]	[164..1]
gi\|171988650, gi... - gi\|68056510\|ref\|ZP_00540626.1\| Ribosomal protein L10 [Exiguobacterium sibiricum 255-15], gi\|68006889...	174.0	[0..3]	[164..5]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIIEAKKQ LVDEIAEVLS NSVSTVIVDY RGLTVAEVTD LRSQLREAGV EYKVYKNTMV  60
   61 RRAAEKAGIE GLDEFLTGPT AIATSSEDAV AAAKVISGFA KDHEALEIKS GVMEGNVITA 120
  121 EEVKTVGSLP SHDGLVSMLL SVLQAPVRNF AYAVKAIGEQ KEENAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.24907053933923	bayes_pls_golite062009
structural molecule activity	2.96620336163367	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: