YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260137, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260137, gi|....

Description	E-value	Query Range	Subject Range
gi\|42784617, gi\|... - gi\|42784617\|ref\|NP_981864.1\| murein hydrolase regulator LrgA [Bacillus cereus ATCC 10987], gi\|427405...	2.0E-32	[1..143]	[28..170]
gi\|75761698, gi\|... - gi\|75761698\|ref\|ZP_00741642.1\| Murein hydrolase exporter [Bacillus thuringiensis serovar israelensis...	1.0E-31	[1..143]	[28..170]
gi\|65317421 - gi\|65317421\|ref\|ZP_00390380.1\| COG1380: Putative effector of murein hydrolase LrgA [Bacillus anthrac...	2.0E-31	[1..143]	[28..170]
LRGA_BACWK - Antiholin-like protein LrgA OS=Bacillus weihenstephanensis (strain KBAB4) GN=lrgA PE=3 SV=1 gi\|229020664, gi... - gi\|229020664\|ref\|ZP_04177395.1\| Antiholin-like protein lrgA [Bacillus cereus AH1273], gi\|228740637\|g... gi\|228746682, gi... - gi\|229014605\|ref\|ZP_04171720.1\| Antiholin-like protein lrgA [Bacillus mycoides DSM 2048], gi\|2287466... gi\|228647196, gi... - gi\|229136258\|ref\|ZP_04265006.1\| Antiholin-like protein lrgA [Bacillus cereus BDRD-ST196], gi\|2286471... gi\|228734428, gi... - gi\|229026876\|ref\|ZP_04183201.1\| Antiholin-like protein lrgA [Bacillus cereus AH1272], gi\|228734428\|g... gi\|228607351, gi... - gi\|229176116\|ref\|ZP_04303609.1\| Antiholin-like protein lrgA [Bacillus cereus MM3], gi\|228607351\|gb\|E...	5.0E-29	[1..143]	[1..143]
LRGA_BACCR - Antiholin-like protein LrgA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 /...	6.0E-29	[1..143]	[4..146]
Y2828_ERWCT - UPF0299 membrane protein ECA2828 OS=Erwinia carotovora subsp. atroseptica GN=ECA2828 PE=3 SV=1 Y2828_PECAS - UPF0299 membrane protein ECA2828 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN...	1.0E-28	[7..121]	[9..123]
gi\|94311862, gi\|... - gi\|94311862\|ref\|YP_585072.1\| LrgA [Ralstonia metallidurans CH34], gi\|93355714\|gb\|ABF09803.1\| LrgA [R...	2.0E-28	[9..136]	[1..128]
gi\|77975902 - gi\|77975902\|ref\|ZP_00831436.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia frederi...	7.0E-28	[7..121]	[9..123]
gi\|238793459, gi... - gi\|77978846\|ref\|ZP_00834270.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia interme...	2.0E-27	[7..121]	[9..123]
gi\|20092079, gi\|... - gi\|20092079\|ref\|NP_618154.1\| hypothetical protein MA3263 [Methanosarcina acetivorans C2A], gi\|199172...	2.0E-27	[9..138]	[1..135]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKKVYSFL SQAFIFSAIM LISNIIATHL PIPMPSSVIG LVILFSLLCL KVIKLEQVES  60
   61 LGTALTGIIG FLFVPSGISV INSLGVMGQY FVQILTVIVV ATVILLAVTG LFAQFILGKD 120
  121 EKETEDTKEL KVVNKGRKHG KVA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.721246
Match:	PF03788.5
Description:	No description for PF03788.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.913	0.049	integral to membrane	a.47.2	t-snare proteins
View	Download	0.837	0.009	integral to membrane	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.627	0.007	integral to membrane	a.118.8	TPR-like
View	Download	0.661	0.000	cytolysis	a.72.1	Functional domain of the splicing factor Prp18
View	Download	0.767	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits