YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260220, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260220, gi|....

Description	E-value	Query Range	Subject Range
gi\|84326490 - gi\|84326490\|ref\|ZP_00974517.1\| COG0125: Thymidylate kinase [Pseudomonas aeruginosa 2192]	8.0E-50	[1..207]	[1..205]
KTHY_BRAJA - Thymidylate kinase OS=Bradyrhizobium japonicum GN=tmk PE=3 SV=1 KTHY_BRADU - Thymidylate kinase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USD...	5.0E-49	[2..208]	[12..219]
gi\|71916914, gi\|... - gi\|72163182\|ref\|YP_290839.1\| thymidylate kinase [Thermobifida fusca YX], gi\|71916914\|gb\|AAZ56816.1\| ...	6.0E-49	[3..207]	[465..666]
KTHY_NITHX - Thymidylate kinase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tmk PE=3 SV=1	7.0E-49	[1..208]	[11..219]
KTHY_RHOPB - Thymidylate kinase OS=Rhodopseudomonas palustris (strain BisB18) GN=tmk PE=3 SV=1	2.0E-48	[2..208]	[12..220]
KTHY_PELCD - Thymidylate kinase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tmk PE=3 SV=1	4.0E-48	[3..200]	[2..203]
gi\|85697728, gi\|... - gi\|85715533\|ref\|ZP_01046514.1\| thymidylate kinase [Nitrobacter sp. Nb-311A], gi\|85697728\|gb\|EAQ35604...	5.0E-48	[2..208]	[12..219]
gi\|88778555, gi\|... - gi\|88798792\|ref\|ZP_01114375.1\| Thymidylate kinase [Reinekea sp. MED297], gi\|88778555\|gb\|EAR09747.1\| ...	7.0E-48	[1..206]	[1..204]
KTHY_BACLD - Thymidylate kinase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / N...	9.0E-48	[1..207]	[1..207]
KTHY_RHIME - Thymidylate kinase OS=Rhizobium meliloti GN=tmk PE=3 SV=1 KTHY_RHIME - Thymidylate kinase OS=Rhizobium meliloti (strain 1021) GN=tmk PE=3 SV=1	1.0E-47	[2..207]	[13..219]

Back

Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGLFVTIEG PEGSGKTTLI QSLLPYFEQK EQKVMATREP GGIAISEDIR TILHKQEYTM  60
   61 MEARTEALLY AAARRQHLVE KVMPALNEDY LVLCDRFIDS SLAYQGYARG LGMDKVFEIN 120
  121 RFATEDCMPS LTIYLDIEPE VGLARIAKDA GREVNRLDME DISFHKRVRE GYLQVVERFS 180
  181 DRIVLVNADQ PMEKLIEEVI QVIEDKLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.045757
Match:	2ccgA
Description:	No description for 2ccgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits