YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260258, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260258, gi|....

Description	E-value	Query Range	Subject Range
gi\|229329365, gi... - gi\|229499781\|ref\|ZP_04393461.1\| Hsp33 protein [Geobacillus sp. Y412MC52], gi\|229329365\|gb\|EEN94919.1... gi\|221087989, gi... - gi\|221087989\|ref\|ZP_03557523.1\| Hsp33 protein [Geobacillus sp. Y412MC61], gi\|220707982\|gb\|EED63360.1... gi\|56418599, gi\|... - gi\|56418599\|ref\|YP_145917.1\| Hsp33-like chaperonin [Geobacillus kaustophilus HTA426], gi\|56378441\|db...	0.0	[1..288]	[3..290]
HSLO_GEOKA - 33 kDa chaperonin OS=Geobacillus kaustophilus (strain HTA426) GN=hslO PE=3 SV=2 HSLO_GEOKA - 33 kDa chaperonin OS=Geobacillus kaustophilus GN=hslO PE=3 SV=2	0.0	[1..288]	[1..288]
HSLO_GEOSE - 33 kDa chaperonin OS=Geobacillus stearothermophilus GN=hslO PE=3 SV=2	0.0	[1..288]	[1..288]
gi\|89100503, gi\|... - gi\|89100503\|ref\|ZP_01173364.1\| Hsp33-like chaperonin [Bacillus sp. NRRL B-14911], gi\|89084769\|gb\|EAR...	0.0	[1..290]	[1..290]
HSLO_BACCN - 33 kDa chaperonin OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=h...	0.0	[1..291]	[1..291]
gi\|229009577, gi... - gi\|229009577\|ref\|ZP_04166804.1\| 33 kDa chaperonin [Bacillus mycoides DSM 2048], gi\|228751721\|gb\|EEM0... gi\|228618441, gi... - gi\|229165056\|ref\|ZP_04292852.1\| 33 kDa chaperonin [Bacillus cereus AH621], gi\|228618441\|gb\|EEK75470.... gi\|229131075, gi... - gi\|229131075\|ref\|ZP_04259988.1\| 33 kDa chaperonin [Bacillus cereus BDRD-ST196], gi\|228652412\|gb\|EEL0... HSLO_BACWK - 33 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=hslO PE=3 SV=1	0.0	[1..291]	[1..291]
gi\|238857929, gi... - gi\|238857929\|ref\|ZP_04648158.1\| chaperonin HslO [Enterococcus faecalis TUSoD Ef11], gi\|238829599\|gb\|... HSLO_ENTFA - 33 kDa chaperonin OS=Enterococcus faecalis GN=hslO PE=3 SV=1 HSLO_ENTFA - 33 kDa chaperonin OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=hslO PE=3 SV=1 gi\|227174969, gi... - gi\|227555912\|ref\|ZP_03985959.1\| heat shock protein Hsp33 [Enterococcus faecalis HH22], gi\|227174969\|... gi\|229550493, gi... - gi\|229550493\|ref\|ZP_04439218.1\| heat shock protein Hsp33 [Enterococcus faecalis ATCC 29200], gi\|2293... gi\|229307832, gi... - gi\|229546904\|ref\|ZP_04435629.1\| heat shock protein Hsp33 [Enterococcus faecalis TX1332], gi\|22930783...	0.0	[1..290]	[1..290]
gi\|221317136 - gi\|221317136\|ref\|ZP_03598430.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321399 - gi\|221321399\|ref\|ZP_03602693.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. SMY] HSLO_BACSU - 33 kDa chaperonin OS=Bacillus subtilis GN=hslO PE=1 SV=1 gi\|221312203 - gi\|221312203\|ref\|ZP_03594008.1\| Hsp33-like chaperonin [Bacillus subtilis subsp. subtilis str. NCIB 3... HSLO_BACSU - 33 kDa chaperonin OS=Bacillus subtilis (strain 168) GN=hslO PE=1 SV=1	0.0	[3..290]	[2..288]
gi\|56554327, gi\|... - gi\|56554328\|pdb\|1VZY\|B Chain B, Crystal Structure Of The Bacillus Subtilis Hsp33, gi\|56554327\|pdb\|1V...	0.0	[3..290]	[2..288]
gi\|255005305 - gi\|255005305\|ref\|ZP_05143906.2\| Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus Mu50-omeg... gi\|253315219 - gi\|253315219\|ref\|ZP_04838432.1\| Hsp33-like chaperonin [Staphylococcus aureus subsp. aureus str. CF-M... HSLO_STAA9 - 33 kDa chaperonin OS=Staphylococcus aureus (strain JH9) GN=hslO PE=3 SV=1 HSLO_STAA1 - 33 kDa chaperonin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=hslO PE=3 SV=1 gi\|25308253 - pir\|\|A89818 hypothetical protein SA0470 [imported] - Staphylococcus aureus (strain N315) HSLO_STAAN - 33 kDa chaperonin OS=Staphylococcus aureus (strain N315) GN=hslO PE=1 SV=1 HSLO_STAA2 - 33 kDa chaperonin OS=Staphylococcus aureus (strain JH1) GN=hslO PE=3 SV=1 HSLO_STAAM - 33 kDa chaperonin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=hslO PE=3 SV=1	0.0	[3..291]	[4..292]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDYLVKALA FDGEVRAYSV RTTNTVSEAQ RRHDTWRTAS AALGRSLTAG TMMGAMLKGD  60
   61 QKLTIKVEGN GPIGPILVDA HANGDVRGYV TNPHVDFEGT EQGKLRVYQA VGTEGFVTVI 120
  121 KDIGMREPFI GQSPIVSGEL GEDFTYYFAV SEQTPSSVGV GVLVNGDDSI LAAGGFILQI 180
  181 MPGAQEETIS FIEERLQKIP PVSTLIEQGL SPEELLYAVL GEDKVKVLET MDVQFNCTCS 240
  241 RERIESVLIS LGKTELEQVR EEEEETEVHC HFCNERYKFS KEDITNLIEN L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	1vzyA
Description:	Crystal structure of the Bacillus subtilis HSP33
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.55988368958585	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
protein binding	0.100538309706115	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: