YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260277, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260277, gi|....

Description	E-value	Query Range	Subject Range
ISPF_BACCN - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cytotoxicus (strain DSM 22905 / CI...	5.0E-73	[1..158]	[1..158]
ISPF_BACC1 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 24...	5.0E-73	[1..158]	[1..158]
ISPF_GEOKA - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1 ISPF_GEOKA - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus (strain HTA426) GN...	4.0E-72	[1..157]	[1..157]
ISPF_HAEIE - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus influenzae (strain PittEE) GN=i... ISPF_HAEIN - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus influenzae GN=ispF PE=1 SV=1 ISPF_HAEIN - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus influenzae (strain ATCC 51907 /... gi\|229847228, gi... - gi\|229847228\|ref\|ZP_04467332.1\| 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Haemophilus i...	8.0E-72	[1..158]	[1..158]
gi\|145629642, gi... - gi\|145629642\|ref\|ZP_01785439.1\| 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Haemophilus i... gi\|46133032 - gi\|46133032\|ref\|ZP_00156473.2\| COG0245: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Haemop...	1.0E-71	[1..158]	[1..158]
gi\|42628891 - gi\|42628891\|ref\|ZP_00154443.1\| COG0245: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Haemop...	2.0E-71	[1..158]	[1..158]
ISPF_ACTP2 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Actinobacillus pleuropneumoniae serotype 5b... gi\|46143508 - gi\|46143508\|ref\|ZP_00204492.1\| COG0245: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Actino... ISPF_ACTPJ - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Actinobacillus pleuropneumoniae serotype 3 ...	2.0E-71	[1..158]	[1..158]
ISPF_HAEDU - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus ducreyi GN=ispF PE=3 SV=1 ISPF_HAEDU - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus ducreyi (strain 35000HP / ATCC ...	7.0E-71	[1..158]	[1..158]
ISPF_MANSM - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mannheimia succiniciproducens (strain MBEL5...	2.0E-70	[1..157]	[1..157]
ISPF_HAEI8 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus influenzae (strain 86-028NP) GN...	4.0E-70	[1..158]	[1..158]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRIGQGFDV HEFAEGRPLI IGGITIPHEK GLIGHSDADV LLHTIADACL GAIAAGDIGK  60
   61 HFPDTDPAFK DADSAVLLQK VWEFVREQGY ELGNLDCTII AQKPKMAPHI ESMRKRISEL 120
  121 LETSIDNINV KATTTEKLGF TGREEGIASQ AVVLLQKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.154902
Match:	1jn1A
Description:	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	5.90222038729348	bayes_pls_golite062009
phosphorus-oxygen lyase activity	3.82238498158628	bayes_pls_golite062009
catalytic activity	1.89592759292365	bayes_pls_golite062009
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	1.55973202658962	bayes_pls_golite062009
lyase activity	1.47817320758946	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: