YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260515, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260515, gi|....

Description	E-value	Query Range	Subject Range
gi\|33865747, gi\|... - gi\|33865747\|ref\|NP_897306.1\| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi\|33632917\|emb\|CAE...	2.0E-60	[2..186]	[7..194]
gi\|78184723, gi\|... - gi\|78184723\|ref\|YP_377158.1\| thioredoxin peroxidase [Synechococcus sp. CC9902], gi\|78169017\|gb\|ABB26...	3.0E-60	[2..186]	[10..197]
gi\|116070595, gi... - gi\|116070595\|ref\|ZP_01467864.1\| thioredoxin peroxidase [Synechococcus sp. BL107], gi\|116066000\|gb\|EA...	3.0E-60	[2..186]	[7..194]
gi\|84512778, gi\|... - gi\|84518029\|ref\|ZP_01005378.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9211], gi\|84...	4.0E-60	[2..186]	[6..193]
gi\|33634943, gi\|... - gi\|33863026\|ref\|NP_894586.1\| thioredoxin peroxidase [Prochlorococcus marinus str. MIT 9313], gi\|3363...	7.0E-60	[2..186]	[7..194]
gi\|116068112, gi... - gi\|116074890\|ref\|ZP_01472151.1\| thioredoxin peroxidase [Synechococcus sp. RS9916], gi\|116068112\|gb\|E...	1.0E-59	[2..186]	[7..194]
gi\|86167507, gi\|... - gi\|87124628\|ref\|ZP_01080476.1\| thioredoxin peroxidase [Synechococcus sp. RS9917], gi\|86167507\|gb\|EAQ...	2.0E-59	[2..186]	[7..194]
gi\|78197313, gi\|... - gi\|78212854\|ref\|YP_381633.1\| thioredoxin peroxidase [Synechococcus sp. CC9605], gi\|78197313\|gb\|ABB35...	2.0E-59	[2..186]	[7..194]
PRDX2_CRIGR - Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3	5.0E-59	[4..186]	[8..192]
gi\|62901916 - gi\|62901916\|gb\|AAY18909.1\| thioredoxin peroxidase 1-like [synthetic construct]	9.0E-59	[3..186]	[31..216]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLIGTEVKP FKANAYHNGE FIQVTDESLK GKWSVVCFYP ADFTFVCPTE LEDLQNQYAT  60
   61 LKELGVEVYS VSTDTHFTHK AWHDSSETIG KIEYIMIGDP TRTITTNFNV LMEEEGLAAR 120
  121 GTFIIDPDGV IQSMEINADG IGRDASILVN KIKAAQYVRN NPGEVCPAKW QEGSATLKPS 180
  181 LDLVGKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1yepA
Description:	Structural and biochemical analysis of the link between enzymatic activity and olgomerization in AhpC, a bacterial peroxiredoxin.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits