YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21398446, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	497 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21398446, gi|....

Description	E-value	Query Range	Subject Range
gi\|52785361, gi\|... - gi\|52785361\|ref\|YP_091190.1\| hypothetical protein BLi01598 [Bacillus licheniformis ATCC 14580], gi\|5...	6.0E-92	[1..497]	[5..513]
gi\|68056384, gi\|... - gi\|68056384\|ref\|ZP_00540507.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	5.0E-88	[2..497]	[6..506]
gi\|221318508 - gi\|221318508\|ref\|ZP_03599802.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTG3C_BACSU - PTS system glucose-specific EIICBA component OS=Bacillus subtilis (strain 168) GN=ptsG PE=1 SV=2 gi\|221322782 - gi\|221322782\|ref\|ZP_03604076.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon... PTGA_BACSU, PTG3... - (P20166) PTS system, glucose-specific IIABC component (EIIABC-Glc) (Glucose-permease IIABC component... gi\|221313586 - gi\|221313586\|ref\|ZP_03595391.1\| phosphotransferase system (PTS) glucose-specific enzyme IICBA compon...	2.0E-87	[1..497]	[5..514]
gi\|89149085, gi\|... - gi\|89202893\|ref\|ZP_01181598.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	7.0E-87	[1..497]	[5..513]
gi\|255004986 - gi\|255004986\|ref\|ZP_05143587.2\| PTS enzyme II [Staphylococcus aureus subsp. aureus Mu50-omega] gi\|269201840\|ref... - PTS system, IIABC components [Staphylococcus aureus subsp. aureus ED98] PTG3C_STAA2 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH1) GN=ptsG PE=3 SV=1 PTG3C_STAA9 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain JH9) GN=ptsG PE=3 SV=1 PTG3C_STAAN - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain N315) GN=ptsG PE=1 SV=... gi\|25287946 - pir\|\|A89781 hypothetical protein glcA [imported] - Staphylococcus aureus (strain N315) PTG3C_STAA1 - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=... PTG3C_STAAM - PTS system glucose-specific EIICBA component OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN...	1.0E-86	[1..497]	[5..500]
gi\|15613407, gi\|... - gi\|15613407\|ref\|NP_241710.1\| PTS system, glucose-specific enzyme II, A component [Bacillus haloduran... gi\|25287942 - pir\|\|D83755 PTS system, glucose-specific enzyme II, A component BH0844 [imported] - Bacillus halodur...	5.0E-86	[2..497]	[6..502]
PTU3C_STACA - PTS system glucoside-specific EIICBA component OS=Staphylococcus carnosus GN=glcB PE=1 SV=1	2.0E-85	[2..497]	[9..516]
gi\|90431648, gi\|... - gi\|90584591\|ref\|ZP_01240304.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I... gi\|90428871, gi\|... - gi\|90581875\|ref\|ZP_01237640.1\| Sugar-specific permease, EIIA 1 domain:PTS system, glucose-specific I...	3.0E-85	[1..497]	[36..544]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQFLQRIGK ALMLPIAVLP AAGLLLRLGQ EDVFNIPVMA QAGAAIFDNL ALIFAIGVAI  60
   61 GLSVDGSGAA GLAGAIGYLV LQNTTNALSK TYSAAELNDK LKSVQDLVGS VDPTKLADTM 120
  121 TKVSKAAALT PKINMAILGG IIAGVVAGLL YNKFHKIKLP EWLGFFAGKR F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [172-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPIITSIVML LLGLVFGQIW PTIQSGIDAV AHGIVNLGSI GAGLFGLLNR LLIPIGLHHV  60
   61 MNTYFWFVLG DFTNAAGDIV HGDIARFFAK DPSAGMFMTG FFPVMMFGLP AACFAMIAAA 120
  121 KPEKRKMVTG MLGGLALTSF LTGITEPIEF SFMFLSPVLY GIHAVLTGLS LFITTTLGIH 180
  181 DGFSFSAGAI DYVLNFGIAT KPLLLAGIGL IYAAIYFVVF YFLIKKFDLK TPGRE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [407-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEEEMAEGEE APVAGSIGET YVAALGGKEN LTVIDNCATR LRLQVKDAGQ VNEAALKRAG  60
   61 AKGVMKLSNT SVQVIVGTNV ESVADDMKKH V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	1o2fB
Description:	Glucose permease domain IIB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: