YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260705, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260705, gi|....

Description	E-value	Query Range	Subject Range
gi\|163860669, gi... - gi\|89206025\|ref\|ZP_01184589.1\| RNA methyltransferase TrmH, group 2 [Bacillus weihenstephanensis KBAB... gi\|229131481, gi... - gi\|229131481\|ref\|ZP_04260374.1\| Uncharacterized tRNA/rRNA methyltransferase [Bacillus cereus BDRD-ST...	6.0E-43	[1..162]	[1..162]
gi\|89203136, gi\|... - gi\|89203136\|ref\|ZP_01181832.1\| RNA methyltransferase TrmH, group 2 [Bacillus cereus subsp. cytotoxis...	1.0E-42	[1..162]	[1..162]
gi\|25316695 - pir\|\|A83664 tRNA/rRNA methyltransferase BH0113 [imported] - Bacillus halodurans (strain C-125) gi\|15612676, gi\|... - gi\|15612676\|ref\|NP_240979.1\| tRNA/rRNA methyltransferase [Bacillus halodurans C-125], gi\|10172725\|db...	8.0E-42	[2..157]	[96..249]
gi\|221089776, gi... - gi\|221089776\|ref\|ZP_03559286.1\| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC6... gi\|229500404, gi... - gi\|229500404\|ref\|ZP_04394068.1\| RNA methyltransferase, TrmH family, group 2 [Geobacillus sp. Y412MC5... gi\|56419019, gi\|... - gi\|56419019\|ref\|YP_146337.1\| rRNA methylase [Geobacillus kaustophilus HTA426], gi\|56378861\|dbj\|BAD74...	3.0E-41	[1..156]	[1..156]
gi\|221308732 - gi\|221308732\|ref\|ZP_03590579.1\| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. ... gi\|1381681 - gi\|1381681\|gb\|AAB02738.1\| CspR gi\|221322254 - gi\|221322254\|ref\|ZP_03603548.1\| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. ... gi\|221317980 - gi\|221317980\|ref\|ZP_03599274.1\| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. ... gi\|221313055 - gi\|221313055\|ref\|ZP_03594860.1\| rRNA methylase-like protein [Bacillus subtilis subsp. subtilis str. ...	8.0E-41	[1..156]	[1..156]
gi\|77954715, gi\|... - gi\|77954715\|ref\|ZP_00819103.1\| RNA methyltransferase TrmH, group 3 [Marinobacter aquaeolei VT8], gi\|...	8.0E-41	[2..151]	[96..243]
TRML_GEOSE - Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Geobacillus stearothermophilus PE=3 SV=1	4.0E-40	[1..156]	[1..156]
gi\|52079368, gi\|... - gi\|52784729\|ref\|YP_090558.1\| hypothetical protein BLi00957 [Bacillus licheniformis ATCC 14580], gi\|5...	5.0E-40	[1..156]	[1..156]
gi\|48859457, gi\|... - gi\|67875040\|ref\|ZP_00504559.1\| RNA methyltransferase TrmH, group 3 [Clostridium thermocellum ATCC 27... gi\|196198671, gi... - gi\|196251913\|ref\|ZP_03150578.1\| RNA methyltransferase, TrmH family, group 3 [Clostridium thermocellu...	1.0E-39	[2..153]	[128..277]
gi\|16802287 - gi\|16802287\|ref\|NP_463772.1\| hypothetical protein lmo0241 [Listeria monocytogenes EGD-e] gi\|127632096, gi... - gi\|254831934\|ref\|ZP_05236589.1\| hypothetical protein Lmon1_11295 [Listeria monocytogenes 10403S], gi... gi\|254913471, gi... - gi\|254913471\|ref\|ZP_05263483.1\| hypothetical protein LmonJ2_11769 [Listeria monocytogenes J2818], gi... gi\|47097641, gi\|... - gi\|47097641\|ref\|ZP_00235161.1\| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes s... gi\|254828701, gi... - gi\|254828701\|ref\|ZP_05233388.1\| hypothetical protein LmonocytogeFSL_09611 [Listeria monocytogenes FS... gi\|16799350 - gi\|16799350\|ref\|NP_469618.1\| hypothetical protein lin0273 [Listeria innocua Clip11262] gi\|254937948, gi... - gi\|254937948\|ref\|ZP_05269645.1\| hypothetical protein LmonF6_12499 [Listeria monocytogenes F6900], gi... gi\|16412702, gi\|... - pir\|\|AB1467 conserved hypothetical protein like to B. subtilis YacO protein homolog lin0273 [importe... gi\|153200701, gi... - gi\|254932460\|ref\|ZP_05265819.1\| hypothetical protein LmonH_08513 [Listeria monocytogenes HPB2262], g... gi\|16409606, gi\|... - pir\|\|AB1105 conserved hypothetical proteins like to B. subtilis YacO protein homolog lmo0241 [import... gi\|226222870, gi... - gi\|226222870\|ref\|YP_002756977.1\| Conserved hypothetical proteins like to B. subtilis YacO protein [L... gi\|254825715 - gi\|254825715\|ref\|ZP_05230716.1\| hypothetical protein LmonFS_11134 [Listeria monocytogenes FSL J1-194... gi\|254872146 - gi\|254872146\|ref\|ZP_05244856.1\| hypothetical protein LmonocytogFSL_04571 [Listeria monocytogenes FSL... gi\|254991759 - gi\|254991759\|ref\|ZP_05273949.1\| hypothetical protein LmonocytoFSL_00582 [Listeria monocytogenes FSL ... gi\|255022535 - gi\|255022535\|ref\|ZP_05294521.1\| hypothetical protein LmonocyFSL_01634 [Listeria monocytogenes FSL J1... gi\|255027363 - gi\|255027363\|ref\|ZP_05299349.1\| hypothetical protein LmonocytFSL_15268 [Listeria monocytogenes FSL J... gi\|255520315 - gi\|255520315\|ref\|ZP_05387552.1\| hypothetical protein LmonocFSL_03647 [Listeria monocytogenes FSL J1-... gi\|153186389, gi... - gi\|254900578\|ref\|ZP_05260502.1\| hypothetical protein LmonJ_12209 [Listeria monocytogenes J0161], gi\|...	1.0E-39	[1..151]	[98..246]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVHVVLYQP EIPANTGNIA RTCAATGTEL HLIRPLGFST DDKMLKRAGL DYWQHVKITY  60
   61 YDSIEEFYEK NKDGEFFYLT KYGEKAHTAF DYSKREKDYY FVFGRETNGL PANVIEENFD 120
  121 HCLRIPMTDK VRSLNLSNTA AILIYEAFRQ QNYPGLDLEI VY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1j85A
Description:	Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
tRNA methyltransferase activity	2.52700462137917	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	2.29844424181442	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.0947794364355	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: