YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260812, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260812, gi|....

Description	E-value	Query Range	Subject Range
gi\|25297027 - pir\|\|E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodura... gi\|15616207, gi\|... - gi\|15616207\|ref\|NP_244512.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus halodurans C...	0.0	[2..306]	[4..317]
gi\|23099907, gi\|... - gi\|23099907\|ref\|NP_693373.1\| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyen...	0.0	[2..306]	[7..320]
gi\|89100170, gi\|... - gi\|89100170\|ref\|ZP_01173038.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus sp. NRRL B...	0.0	[3..306]	[13..325]
gi\|89158826, gi\|... - gi\|89211579\|ref\|ZP_01189937.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	0.0	[3..306]	[8..321]
gi\|56963011, gi\|... - gi\|56963011\|ref\|YP_174738.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	0.0	[2..306]	[5..318]
gi\|88925013, gi\|... - gi\|88945338\|ref\|ZP_01148515.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	0.0	[1..306]	[1..317]
gi\|78044045, gi\|... - gi\|78044045\|ref\|YP_359973.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein [Carboxydot...	0.0	[2..305]	[4..315]
gi\|94555721, gi\|... - gi\|94985440\|ref\|YP_604804.1\| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protei...	0.0	[2..306]	[22..335]
gi\|219536785, gi... - gi\|68208193\|ref\|ZP_00560323.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	0.0	[1..306]	[1..316]
gi\|89893252, gi\|... - gi\|89893252\|ref\|YP_516739.1\| hypothetical protein DSY0506 [Desulfitobacterium hafniense Y51], gi\|893...	0.0	[1..306]	[1..316]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLKVEDLK VHFPIKGGVF GRTLDYVRAV DGVSFELQPG ETYGIVGESG SGKSTTGKAI  60
   61 MHLTKATGGS IHFNNRDLTK LSRSELREQR KDIQMIFQDP YSSLNPKKRV MDIIAEPLRN 120
  121 FEKLSPDEER RAVQDYLDKV GLNPESIYKY PHEFSGGQRQ RIGIARALTL KPKLIIADEP 180
  181 VSALDVSVQA QVLNFLQDLQ SELGLTYLFI SHDLGVIRHM CDRIGVMYRG RIVEEATSAE 240
  241 IYNNPQHIYT KRLISAIPDI RPENREQQRK LRREVSAEYE KSYENYFNEN GRAYDLKPIS 300
  301 PTHRVALP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.69897
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits