YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260877, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260877, gi|....

Description	E-value	Query Range	Subject Range
gi\|55670886, gi\|... - gi\|55670886\|pdb\|1XI3\|B Chain B, Thiamine Phosphate Pyrophosphorylase From Pyrococcus Furiosus Pfu-12...	2.0E-35	[2..200]	[14..212]
THIE_PYRFU - Thiamine-phosphate synthase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) G... THIE_PYRFU - Thiamine-phosphate pyrophosphorylase OS=Pyrococcus furiosus GN=thiE PE=1 SV=1	3.0E-35	[2..200]	[6..204]
gi\|92885240 - gi\|92885240\|gb\|ABE87727.1\| Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase [Medicago...	4.0E-35	[5..202]	[368..574]
THIE_PYRAB - Thiamine-phosphate pyrophosphorylase OS=Pyrococcus abyssi GN=thiE PE=3 SV=1 THIE_PYRAB - Thiamine-phosphate synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=thiE PE=3 SV=1	8.0E-35	[2..200]	[6..204]
gi\|23130348 - gi\|23130348\|ref\|ZP_00112165.1\| COG0352: Thiamine monophosphate synthase [Nostoc punctiforme PCC 7310...	8.0E-35	[2..203]	[168..369]
THIE_PYRHO - Thiamine-phosphate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NB... THIE_PYRHO - Probable thiamine-phosphate pyrophosphorylase OS=Pyrococcus horikoshii GN=thiE PE=3 SV=2	1.0E-34	[2..200]	[6..204]
THIE_SYNY3 - Thiamine-phosphate synthase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=thiE PE=3 SV=1 gi\|7427960 - pir\|\|S74943 thiamine-phosphate diphosphorylase (EC 2.5.1.3) - Synechocystis sp. (strain PCC 6803) THIE_SYNY3 - Thiamine-phosphate pyrophosphorylase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=th...	3.0E-34	[5..200]	[145..340]
gi\|48891748, gi\|... - gi\|71674938\|ref\|ZP_00672684.1\| Thiamine monophosphate synthase [Trichodesmium erythraeum IMS101], gi...	3.0E-34	[5..202]	[151..348]
THIE_METMP - Thiamine-phosphate synthase OS=Methanococcus maripaludis (strain S2 / LL) GN=thiE PE=3 SV=1 THIE_METMP - Thiamine-phosphate pyrophosphorylase OS=Methanococcus maripaludis GN=thiE PE=3 SV=1	4.0E-34	[2..201]	[6..205]
gi\|87309318, gi\|... - gi\|87309318\|ref\|ZP_01091454.1\| probable thiamine-phosphate pyrophosphorylase [Blastopirellula marina...	9.0E-34	[4..199]	[156..354]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNELHVISN GHMSFEELVS VAMQIESEID YLHIREREKS TKELYEGVES LLKKGFPASK  60
   61 LVINDRIDIA ILLNIPRVQL GYRSTDVRSV KEKFSYLHVG YSVHSLEEAI EAFKNGADSL 120
  121 VYGHVFPTEC KKGVPARGLE EISDIARSLS IPIIAIGGIT PENTKDILAS EVSGIAVMSG 180
  181 IVSSSNPYSK AKSYKESIRK WAEKHV

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Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	1yadA
Description:	Structure of TenI from Bacillus subtilis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits