YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254898, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254898, gi|....

Description	E-value	Query Range	Subject Range
gi\|152974703, gi... - gi\|89200613\|ref\|ZP_01179365.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Bacillus cere...	4.0E-80	[1..310]	[1..310]
gi\|163861272, gi... - gi\|89204600\|ref\|ZP_01183177.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Bacillus weih...	6.0E-80	[1..310]	[1..310]
gi\|206736971, gi... - gi\|206968051\|ref\|ZP_03229007.1\| 3-oxoacyl-(acyl-carrier-protein) synthase III [Bacillus cereus AH113... gi\|218896211, gi... - gi\|218896211\|ref\|YP_002444622.1\| 3-oxoacyl-(acyl-carrier-protein) synthase III [Bacillus cereus G984... gi\|74488955, gi\|... - gi\|75763553\|ref\|ZP_00743259.1\| 3-oxoacyl-[acyl-carrier-protein] synthase III [Bacillus thuringiensis...	1.0E-79	[1..310]	[1..310]
FABH1_BACCR - 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31...	1.0E-79	[1..310]	[1..310]
gi\|42780367, gi\|... - gi\|42780367\|ref\|NP_977614.1\| 3-oxoacyl-(acyl carrier protein) synthase III [Bacillus cereus ATCC 109...	3.0E-79	[1..310]	[1..310]
gi\|47554925, gi\|... - gi\|47568377\|ref\|ZP_00239078.1\| 3-oxoacyl-(acyl-carrier-protein) synthase III subfamily [Bacillus cer...	5.0E-79	[1..310]	[1..310]
FABH_CALS8 - 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 434...	3.0E-78	[2..308]	[4..327]
gi\|65318552 - gi\|65318552\|ref\|ZP_00391511.1\| COG0332: 3-oxoacyl-[acyl-carrier-protein] synthase III [Bacillus anth... gi\|228926315, gi... - gi\|228926315\|ref\|ZP_04089389.1\| 3-oxoacyl-[acyl-carrier-protein] synthase 3 [Bacillus thuringiensis ... gi\|228944885, gi... - gi\|228944885\|ref\|ZP_04107248.1\| 3-oxoacyl-[acyl-carrier-protein] synthase 3 [Bacillus thuringiensis ... gi\|228932552, gi... - gi\|228932552\|ref\|ZP_04095433.1\| 3-oxoacyl-[acyl-carrier-protein] synthase 3 [Bacillus thuringiensis ... gi\|229120800, gi... - gi\|229120800\|ref\|ZP_04250043.1\| 3-oxoacyl-[acyl-carrier-protein] synthase 3 [Bacillus cereus 95/8201... gi\|228693155, gi... - gi\|229090219\|ref\|ZP_04221467.1\| 3-oxoacyl-[acyl-carrier-protein] synthase 3 [Bacillus cereus Rock3-4...	2.0E-77	[4..310]	[2..308]
FABH_NITEU - 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298... FABH_NITEU - 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Nitrosomonas europaea GN=fabH PE=3 SV=1	2.0E-76	[1..308]	[1..318]
FABH_NITEC - 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Nitrosomonas eutropha (strain C91) GN=fabH PE=3 SV=1	3.0E-76	[1..308]	[3..320]

Back

Predicted Domain #1

Region A:
Residues: [1-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVGILGIGR YVPEKVVTNH DLEKIMDTSD EWIRTRTGIA ERRIADDTID TSYMAVEASK  60
   61 KALEDAGISG EDIDLILVAT VTPDRAFPAV ACVIQEAIGA KHAAAMDLSA ACAGFMYGMI 120
  121 TAQQFIQTGT YKNVLVVGSD KLSKIVDWND RNTAVLFGDG AGAIVMGAVS EGKGVLSFEL 180
  181 GADGSGGKHL YQDEYVMMNG REVFKFAVRQ LGDSCLRVLD KAGLTKEDVD FLVPHQANIR 240
  241 IMESARERLN LPQEKMSMTI EKFGNTSASS IPIAMVEELQ NGRIQDGDLI ILVGFGGGLT 300
  301 WGAVALRWGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.045757
Match:	1zowA
Description:	Crystal Structure of S. aureus FabH, beta-ketoacyl carrier protein synthase III
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits