YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255304, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255304, gi|....

Description	E-value	Query Range	Subject Range
gi\|50758116 - gi\|50758116\|ref\|XP_415768.1\| PREDICTED: similar to MGC69029 protein [Gallus gallus]	6.0E-32	[1..117]	[294..438]
gi\|116283284 - gi\|116283284\|gb\|AAH03240.1\| Por protein [Mus musculus]	4.0E-31	[1..117]	[80..224]
gi\|73957708 - gi\|73957708\|ref\|XP_858134.1\| PREDICTED: similar to NADPH--cytochrome P450 reductase (CPR) (P450R) is...	8.0E-31	[1..117]	[36..180]
gi\|62089334 - gi\|62089334\|dbj\|BAD93111.1\| Hypothetical protein DKFZp686G04235 variant [Homo sapiens]	9.0E-31	[1..117]	[89..233]
NCPR_PIG - NADPH--cytochrome P450 reductase OS=Sus scrofa GN=POR PE=1 SV=2	9.0E-31	[1..117]	[80..224]
gi\|109066224 - gi\|109066224\|ref\|XP_001109664.1\| PREDICTED: P450 (cytochrome) oxidoreductase isoform 2 [Macaca mulat...	1.0E-30	[1..117]	[83..227]
gi\|60811691 - gi\|60811691\|gb\|AAX36181.1\| P450 cytochrome oxidoreductase [synthetic construct]	1.0E-30	[1..117]	[83..227]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAYDSMTG NVKRFIHKLN MPAVQIGEDL VIDEDFILIT YTTGFGNVPE RVLEFLERNN  60
   61 EKLKGVSASG NRNWGDMFGA SADKISAKYE VPIVSKFELS GTNNDVEYFK ERVREIATH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1rljA
Description:	Structural Genomics, a Flavoprotein NrdI from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.646071595570549	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: