YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261572, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261572, gi|....

Description	E-value	Query Range	Subject Range
gi\|25300875 - pir\|\|D83847 two-component response regulator resD [imported] - Bacillus halodurans (strain C-125) gi\|10174197, gi\|... - gi\|15614143\|ref\|NP_242446.1\| two-component response regulator [Bacillus halodurans C-125], gi\|101741...	1.0E-62	[1..238]	[1..238]
gi\|56963600, gi\|... - gi\|56963600\|ref\|YP_175331.1\| two-component response regulator [Bacillus clausii KSM-K16], gi\|5690984...	4.0E-62	[1..235]	[1..235]
RESD_BACSU - Transcriptional regulatory protein resD OS=Bacillus subtilis GN=resD PE=3 SV=1 gi\|16079369, gi\|... - gi\|2634747\|emb\|CAB14244.1\| two-component response regulator [Bacillus subtilis subsp. subtilis str. ...	8.0E-62	[2..235]	[4..237]
gi\|48860348, gi\|... - gi\|67873291\|ref\|ZP_00503570.1\| Response regulator receiver:Transcriptional regulatory protein, C ter...	2.0E-61	[1..235]	[1..227]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	4.0E-61	[3..236]	[103..334]
gi\|152975000, gi... - gi\|89203147\|ref\|ZP_01181842.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	4.0E-61	[1..238]	[1..238]
gi\|89099082, gi\|... - gi\|89099082\|ref\|ZP_01171961.1\| ResD [Bacillus sp. NRRL B-14911], gi\|89086212\|gb\|EAR65334.1\| ResD [Ba...	6.0E-61	[1..238]	[1..238]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	8.0E-61	[1..235]	[1..229]
gi\|153167803, gi... - gi\|153167803\|ref\|ZP_01927888.1\| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-0... gi\|133735011, gi... - gi\|254931880\|ref\|ZP_05265239.1\| two-component response regulator (ResD) [Listeria monocytogenes HPB2... gi\|46881452, gi\|... - gi\|46908182\|ref\|YP_014571.1\| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b F23... gi\|47093377, gi\|... - gi\|47093377\|ref\|ZP_00231144.1\| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H... gi\|254825556 - gi\|254825556\|ref\|ZP_05230557.1\| two-component response regulator (ResD) [Listeria monocytogenes FSL ... gi\|226224553, gi... - gi\|226224553\|ref\|YP_002758660.1\| two-component response regulator (ResD) [Listeria monocytogenes Cli... gi\|254877933 - gi\|254877933\|ref\|ZP_05250643.1\| two-component response regulator (ResD) [Listeria monocytogenes FSL ... gi\|254852850 - gi\|254852850\|ref\|ZP_05242198.1\| two-component response regulator (ResD) [Listeria monocytogenes FSL ... gi\|255520089 - gi\|255520089\|ref\|ZP_05387326.1\| two-component response regulator (ResD) [Listeria monocytogenes FSL ... gi\|254992998 - gi\|254992998\|ref\|ZP_05275188.1\| two-component response regulator (ResD) [Listeria monocytogenes FSL ...	9.0E-61	[1..238]	[1..238]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENESRILIV DDEDRIRRLL KMYLEREQYT IEEADNGDTA LEMALQNDYD LILLDLMMPG  60
   61 KDGIEVCKGV REKKATPIIM LTAKGEEVNR VQGFEVGTDD YIVKPFSPRE VVLRVKAVLR 120
  121 RSVPTTFFTQ DTTTKDVTVF PHLTIDNDAH RVTADGNEVN LTPKEYELLL FLAKAPDKVF 180
  181 DREQLLKEVW QYEFFGDLRT VDTHVKRLRE KLSKKSPDAA KMIVTVWGVG YKFEVVND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.69897
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits