YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30261618, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30261618, gi|....

Description	E-value	Query Range	Subject Range
gi\|37702072, gi\|... - gi\|37702072\|gb\|AAR00690.1\| cytochrome b [Badis ruber], gi\|37702070\|gb\|AAR00689.1\| cytochrome b [Badi...	7.0E-95	[13..224]	[4..209]
gi\|37515358 - gi\|37515358\|emb\|CAE48157.1\| cytochrome b [Saccostomus sp. 41623]	8.0E-95	[10..223]	[1..208]
gi\|15810691, gi\|... - gi\|15987272\|ref\|NP_387484.1\|CYTB_15795 cytochrome b [Neoceratodus forsteri], gi\|15810691\|gb\|AAL08601...	1.0E-94	[9..223]	[1..209]
CYB_ORYAF - Cytochrome b OS=Orycteropus afer GN=MT-CYB PE=3 SV=1	1.0E-94	[10..224]	[1..209]
gi\|40353584 - gi\|40353584\|gb\|AAR84528.1\| cytochrome b [Geomys personatus megapotamus]	1.0E-94	[13..224]	[4..209]
gi\|62822571 - gi\|62822571\|gb\|AAY15106.1\| cytochrome b [Peromyscus leucopus]	1.0E-94	[10..223]	[1..208]
gi\|6665769, gi\|6... - gi\|6665769\|gb\|AAF23003.1\|AF211916_1 cytochrome b [Reithrodontomys sumichrasti], gi\|6665757\|gb\|AAF229...	2.0E-94	[10..223]	[1..208]
gi\|16904620 - gi\|16904620\|dbj\|BAB71988.1\| cytochrome b [Meles meles]	2.0E-94	[10..223]	[1..208]
CYB_PSEPE - Cytochrome b OS=Pseudocheirus peregrinus GN=MT-CYB PE=3 SV=1	2.0E-94	[10..223]	[1..208]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKIYDWVD ERLDITPIWR DIADHEVPEH VNPAHHFSAF VYCFGGLTFF VTVIQILSGM  60
   61 FLTMYYVPDI KNAWESVYYL QNEVAYGQIV RGMHHWGASL VIVMMFLHTL RVFFQGAYKK 120
  121 PRELNWIVGV LIFFVMLGLG FTGYLLPWDM KALFATKVGI QIAEQTPLIG PYIKTLLAGH 180
  181 SEIVGAQTLT RFFAIHVFFL PAALLGLMAF HFIMIRKQGI SGPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.0
Match:	1q90B
Description:	Structure of the cytochrome b6f (plastohydroquinone : plastocyanin oxidoreductase) from Chlamydomonas reinhardtii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	9.40961255429881	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	5.48960607359191	bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity	5.48960607359191	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	5.12460396279085	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	4.29455986972274	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	4.14658254808421	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.50341532760587	bayes_pls_golite062009
cation transmembrane transporter activity	3.24971217721974	bayes_pls_golite062009
ion transmembrane transporter activity	3.0416933490072	bayes_pls_golite062009
formate dehydrogenase activity	2.95356847428734	bayes_pls_golite062009
electron carrier activity	2.51878542975969	bayes_pls_golite062009
catalytic activity	1.19342057724506	bayes_pls_golite062009
NADH dehydrogenase activity	1.13017385297877	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.03512868485178	bayes_pls_golite062009
binding	0.774901332897627	bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	0.186109641799701	bayes_pls_golite062009
protein binding	0.129189339756749	bayes_pls_golite062009
nucleic acid binding	0.0792243291619011	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: