YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21399603, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21399603, gi|....

Description	E-value	Query Range	Subject Range
gi\|213999608 - gi\|213999608\|ref\|ZP_03410343.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|16760863 - gi\|16760863\|ref\|NP_456480.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|213583527 - gi\|213583527\|ref\|ZP_03365353.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|213426385 - gi\|213426385\|ref\|ZP_03359135.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|16503160, gi\|... - gi\|25322221\|pir\|\|AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella enterica subsp. ... gi\|213163285 - gi\|213163285\|ref\|ZP_03348995.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|29141445, gi\|... - gi\|29141445\|ref\|NP_804787.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	0.0	[2..348]	[5..355]
gi\|205331965, gi... - gi\|205331965\|gb\|EDZ18729.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|168462551, gi... - gi\|195634185\|gb\|EDX52537.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|205342676, gi... - gi\|205342676\|gb\|EDZ29440.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|194404199, gi... - gi\|194445536\|ref\|YP_002041180.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|161613526, gi... - gi\|161613526\|ref\|YP_001587491.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|205327877, gi... - gi\|205327877\|gb\|EDZ14641.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... FLHB_SALTY - Flagellar biosynthetic protein FlhB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... lcl\|NC_016856.1_... - [gene=flhB] [protein=flagellar biosynthesis protein FlhB] [protein_id=YP_005237881.1] [location=comp... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|194472731, gi... - gi\|194472731\|ref\|ZP_03078715.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ente... gi\|197251527, gi... - gi\|197251527\|ref\|YP_002146107.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... gi\|238912509 - gi\|238912509\|ref\|ZP_04656346.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente...	0.0	[2..348]	[5..355]
gi\|197093569, gi... - gi\|197362092\|ref\|YP_002141729.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|56127423, gi\|... - gi\|56413166\|ref\|YP_150241.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	0.0	[2..348]	[5..355]
gi\|62180491, gi\|... - gi\|62180491\|ref\|YP_216908.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|224468109, gi... - gi\|224583582\|ref\|YP_002637380.1\| flagellar biosynthesis protein [Salmonella enterica subsp. enterica...	0.0	[2..348]	[5..355]
gi\|77965592, gi\|... - gi\|78064847\|ref\|YP_367616.1\| flagellar biosynthesis protein FlhB [Burkholderia sp. 383], gi\|77965592...	0.0	[1..347]	[1..354]
gi\|91689601, gi\|... - gi\|91785647\|ref\|YP_560853.1\| flagellar biosynthesis protein FlhB [Burkholderia xenovorans LB400], gi...	0.0	[1..347]	[1..354]
gi\|33575968, gi\|... - gi\|33601532\|ref\|NP_889092.1\| flagellar biosynthesis protein FlhB [Bordetella bronchiseptica RB50], g...	0.0	[1..347]	[1..354]
gi\|152959095, gi... - gi\|77628864\|ref\|ZP_00791450.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Yersinia pse...	0.0	[1..347]	[1..354]
gi\|49611156, gi\|... - gi\|50120630\|ref\|YP_049797.1\| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum SCRI10...	0.0	[1..347]	[1..354]
gi\|33573136 - gi\|33573136\|emb\|CAE36781.1\| flagellar biosynthetic protein FlhB [Bordetella parapertussis] gi\|33596133 - gi\|33596133\|ref\|NP_883776.1\| flagellar biosynthesis protein FlhB [Bordetella parapertussis 12822]	0.0	[1..347]	[1..354]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDNKTEKA TPQKRKKSRE EGNIARSKDL NNLFSILVLA VVVYFFGDWL GFEIANSVSV  60
   61 LFDQIGKNTD STEYFYMMGI LLLKVSAPIL ILVYAFHLFN YMIQVGFLFS SKVIKPKASR 120
  121 INPKNYFTRL FSRKSLVDIL KSLFYMGLIG Y

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAYVLFKKNL EKIVSMIGFN WTASLTEIIR QIKFIFLAIL IILIVLSIID FIYQKWEYEQ  60
   61 DIKMKKEEVK QEHKDNEGDP QVKGKRKNFM HAILQGTIAK KMDG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [256-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATFIVNNPTH ISVVLRYNKH VDAAPIVVAK GEDELALYIR TLAREQEIPM VENRPLARSL  60
   61 YYQVEEDETI PEDLYVAVIE VMRYLIQTNE LEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.608	0.944	flagellum	a.39.1	EF-hand
View	Download	0.794	0.013	protein secretion	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain
View	Download	0.675	0.001	protein secretion	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators
View	Download	0.652	N/A	N/A	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain
View	Download	0.611	N/A	N/A	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits