YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262020, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262020, gi|....

Description	E-value	Query Range	Subject Range
gi\|42781136, gi\|... - gi\|42781136\|ref\|NP_978383.1\| phospholipase, putative [Bacillus cereus ATCC 10987], gi\|42737057\|gb\|AA...	4.0E-72	[1..321]	[1..321]
gi\|47569850, gi\|... - gi\|47569850\|ref\|ZP_00240519.1\| hypothetical protein membrane Spanning protein [Bacillus cereus G9241...	3.0E-71	[1..321]	[1..321]
gi\|74488940, gi\|... - gi\|75763571\|ref\|ZP_00743274.1\| Hypothetical membrane spanning protein [Bacillus thuringiensis serova...	2.0E-67	[1..321]	[25..345]
gi\|30020127, gi\|... - gi\|30020127\|ref\|NP_831758.1\| hypothetical protein BC1989 [Bacillus cereus ATCC 14579], gi\|29895677\|g...	4.0E-66	[1..321]	[1..321]
gi\|24986247, gi\|... - gi\|26991199\|ref\|NP_746624.1\| patatin [Pseudomonas putida KT2440], gi\|24986247\|gb\|AAN70088.1\|AE016648...	3.0E-52	[2..309]	[49..354]
gi\|25490589 - pir\|\|E84000 hypothetical protein BH2805 [imported] - Bacillus halodurans (strain C-125) gi\|15615368, gi\|... - gi\|15615368\|ref\|NP_243671.1\| hypothetical protein BH2805 [Bacillus halodurans C-125], gi\|10175426\|db...	8.0E-52	[1..294]	[1..295]
gi\|82713713, gi\|... - gi\|82739218\|ref\|ZP_00902029.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82713713\|g...	1.0E-51	[2..309]	[26..331]
gi\|70728973, gi\|... - gi\|70728973\|ref\|YP_258707.1\| patatin-like phospholipase family protein [Pseudomonas fluorescens Pf-5...	1.0E-51	[2..301]	[26..320]
gi\|34531028, gi\|... - gi\|38524589\|ref\|NP_689499.2\| chromosome 9 open reading frame 111 [Homo sapiens], gi\|34531028\|dbj\|BAC...	6.0E-51	[3..308]	[926..1218]
gi\|77381701, gi\|... - gi\|77457698\|ref\|YP_347203.1\| patatin [Pseudomonas fluorescens Pf0-1], gi\|77381701\|gb\|ABA73214.1\| pat...	1.0E-50	[2..289]	[30..309]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIDGVFEGG GVRGIAHVGA ICALAEKGYE WERVAGTSAG SIIAALLAAG YSCSELKTII  60
   61 TNIDYDKFTK RTFIDRIPFI GKGLSAWTTL GIYSNIFIEE WIEELLRKKG VHLFTDLPDL 120
  121 NKLKIIASDI SNGKMVIFPD DLPNYGFLNY RFSIAKAVRM SSTIPFFFEP VKWRTPKWKQ 180
  181 PCYMVDGGIL SNYPIWIFDS PTSPRWPTFG FHFVKDDIQA DPAHYNEPIS MFKGLFKTMM 240
  241 QAHDLRHLDK ESKARTITI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	1oxwA
Description:	Patatin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [260-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTGSITSTNF ELTIEEKEWL YNSGYNAANK FLQSWNFRQY IDEYRNGNHN RKTNRYFRQL  60
   61 DS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits