YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256908, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256908, gi|....

Description	E-value	Query Range	Subject Range
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	1.0E-46	[1..209]	[1..231]
gi\|28210824, gi\|... - gi\|28210824\|ref\|NP_781768.1\| transcriptional regulatory protein [Clostridium tetani E88], gi\|2820326...	3.0E-46	[4..209]	[5..226]
gi\|48860348, gi\|... - gi\|67873291\|ref\|ZP_00503570.1\| Response regulator receiver:Transcriptional regulatory protein, C ter...	5.0E-46	[2..209]	[4..224]
gi\|207090866 - gi\|207090866\|gb\|EDZ68137.1\| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus... gi\|224411212, gi... - gi\|254434533\|ref\|ZP_05048041.1\| phosphate regulon transcriptional regulatory protein PhoB [Nitrosoco... gi\|76884178, gi\|... - gi\|77165864\|ref\|YP_344389.1\| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcu...	6.0E-46	[1..209]	[1..224]
gi\|98660596 - gi\|98660596\|dbj\|GAA02177.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	7.0E-46	[2..209]	[5..225]
gi\|51855517, gi\|... - gi\|51891828\|ref\|YP_074519.1\| two-component response regulator [Symbiobacterium thermophilum IAM 1486...	2.0E-45	[2..209]	[3..219]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	2.0E-45	[2..209]	[3..220]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	3.0E-45	[3..209]	[5..226]
PHOP_BACSU - Alkaline phosphatase synthesis transcriptional regulatory protein phoP OS=Bacillus subtilis GN=phoP ... PHOP_BACSU - Alkaline phosphatase synthesis transcriptional regulatory protein PhoP OS=Bacillus subtilis (strain ... gi\|221324377 - gi\|221324377\|ref\|ZP_03605671.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ... gi\|221320095 - gi\|221320095\|ref\|ZP_03601389.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ... gi\|221315178 - gi\|221315178\|ref\|ZP_03596983.1\| two-component response regulator [Bacillus subtilis subsp. subtilis ...	4.0E-45	[1..209]	[1..232]

Back

Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKLLLVED HHIVRRGLVF FLKTREEFEI VGEAENGEDA LTFVRTERPD VVLMDLSMPK  60
   61 MDGIEATKQI KQYDETIKIL ILSSFSEQDY VLPALEAGAD GYQLKEVQPE QLVASIIAIY 120
  121 EGNANFHPKV TPALLGRSAV KKENPFSMLT KREQEVLQEI AKGRSNKEIA AELHITEQTV 180
  181 KTHVSNILAK LEVDDRTQAA LYAVKHGEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits