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View Structure Prediction Details

Protein: gi|30262290, gi|...
Organism: Bacillus anthracis str. Ames
Length: 475 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262290, gi|....

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
2.0E-71 [5..394] [970..1384]
gi|50292087, gi|... - gi|50292087|ref|XP_448476.1| unnamed protein product [Candida glabrata], gi|49527788|emb|CAG61437.1|...
gi|49527788 - gi|49527788|emb|CAG61437.1| unnamed protein product [Candida glabrata]
3.0E-68 [1..472] [135..612]
gi|42548077, gi|... - gi|46115934|ref|XP_383985.1| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi|42548077|gb|E...
6.0E-68 [2..473] [1095..1544]
gi|833812 - gi|833812|gb|AAB48002.1| high-affinity glutamine permease
8.0E-67 [3..472] [140..615]
gi|91084137 - gi|91084137|ref|XP_969912.1| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]
1.0E-65 [3..387] [2472..2856]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1...
gi|46436194, gi|... - gi|68482961|ref|XP_714611.1| potential general amino acid permease [Candida albicans SC5314], gi|464...
2.0E-65 [3..472] [84..551]

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Predicted Domain #1
Region A:
Residues: [1-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDGVVQIEK KLGFFPLIAL VVGTMVGGGV FSLPHDLAVG ANSGSIIIGW CITAMGMIPL  60
   61 ALVYQTLARK KPELEGGIYS YARAGFGEYI GFNSAWGYWL AGILGNVATI MLLFSTLGYF 120
  121 FPIFKGGNSV ASIVGASLLL WTLHFLILFG IREASIMNVI ATIGKLVPIV LFIVVMVTAF 180
  181 RWDTFTQDFW GEGTISVSSI LGQVKNTMLV TLWVFIGVEG AVVLSGRAKN SRDVGKATVL 240
  241 GLILVMSIYI LISVLSMGAM TRGELSVLET PSMGHVLEHV VGTWGAVAIN IGLVASLVGT 300
  301 LIGWFLLVSE ISHVAGKDGV FPKVFTKTNK KQTPHMALWI SNGVAQVIFI IVLFSESTYQ 360
  361 IMYFIASTSI LVPYLLSALF QFKLVITNEL 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.56
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [391-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDAKVKNGSL ALIASLYSVW LIYAAGLKNL LLVSIVYGIG IIVYVYARKE KGNRCFTGIE  60
   61 RYVMWAIVVA AVTSLYMLLT GNIKM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle