YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256939, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256939, gi|....

Description	E-value	Query Range	Subject Range
gi\|42737319, gi\|... - gi\|42781397\|ref\|NP_978644.1\| L-lysine 2,3-aminomutase [Bacillus cereus ATCC 10987], gi\|42737319\|gb\|A...	0.0	[1..473]	[1..473]
gi\|47557295, gi\|... - gi\|47565659\|ref\|ZP_00236699.1\| L-lysine 2,3-aminomutase [Bacillus cereus G9241], gi\|47557295\|gb\|EAL1...	0.0	[1..473]	[1..473]
gi\|228703838, gi... - gi\|229079468\|ref\|ZP_04212008.1\| L-lysine 2,3-aminomutase [Bacillus cereus Rock4-2], gi\|228703838\|gb\|... gi\|228713230, gi... - gi\|229069827\|ref\|ZP_04203109.1\| L-lysine 2,3-aminomutase [Bacillus cereus F65185], gi\|228713230\|gb\|E... gi\|228725323, gi... - gi\|229044042\|ref\|ZP_04191731.1\| L-lysine 2,3-aminomutase [Bacillus cereus AH676], gi\|228725323\|gb\|EE... gi\|228958567, gi... - gi\|228958567\|ref\|ZP_04120287.1\| L-lysine 2,3-aminomutase [Bacillus thuringiensis serovar pakistani s... gi\|228633014, gi... - gi\|229150521\|ref\|ZP_04278737.1\| L-lysine 2,3-aminomutase [Bacillus cereus m1550], gi\|228633014\|gb\|EE... gi\|228638614, gi... - gi\|229144892\|ref\|ZP_04273289.1\| L-lysine 2,3-aminomutase [Bacillus cereus BDRD-ST24], gi\|228638614\|g... gi\|228655772, gi... - gi\|229127695\|ref\|ZP_04256684.1\| L-lysine 2,3-aminomutase [Bacillus cereus BDRD-Cer4], gi\|228655772\|g... gi\|229109738, gi... - gi\|229109738\|ref\|ZP_04239324.1\| L-lysine 2,3-aminomutase [Bacillus cereus Rock1-15], gi\|228673779\|gb... gi\|218160610, gi... - gi\|218232653\|ref\|YP_002366998.1\| L-lysine 2,3-aminomutase [Bacillus cereus B4264], gi\|218160610\|gb\|A... gi\|228593164, gi... - gi\|229190380\|ref\|ZP_04317381.1\| L-lysine 2,3-aminomutase [Bacillus cereus ATCC 10876], gi\|228593164\|... gi\|206971483, gi... - gi\|206971483\|ref\|ZP_03232433.1\| L-lysine 2,3-aminomutase [Bacillus cereus AH1134], gi\|206733468\|gb\|E... gi\|229178666, gi... - gi\|229178666\|ref\|ZP_04306030.1\| L-lysine 2,3-aminomutase [Bacillus cereus 172560W], gi\|228604824\|gb\|... gi\|29895934, gi\|... - gi\|30020383\|ref\|NP_832014.1\| lysine 2,3-aminomutase [Bacillus cereus ATCC 14579], gi\|29895934\|gb\|AAP...	0.0	[1..473]	[1..473]
gi\|152975473, gi... - gi\|89199836\|ref\|ZP_01178593.1\| Protein of unknown function DUF160 [Bacillus cereus subsp. cytotoxis ...	0.0	[1..473]	[1..472]
gi\|228650338, gi... - gi\|229133129\|ref\|ZP_04261965.1\| L-lysine 2,3-aminomutase [Bacillus cereus BDRD-ST196], gi\|228650338\|... gi\|229011567, gi... - gi\|229011567\|ref\|ZP_04168753.1\| L-lysine 2,3-aminomutase [Bacillus mycoides DSM 2048], gi\|228749722\|... gi\|89205547, gi\|... - gi\|89205547\|ref\|ZP_01184116.1\| Protein of unknown function DUF160 [Bacillus weihenstephanensis KBAB4... gi\|228616365, gi... - gi\|229167131\|ref\|ZP_04294874.1\| L-lysine 2,3-aminomutase [Bacillus cereus AH621], gi\|228616365\|gb\|EE...	0.0	[1..473]	[1..472]
gi\|25305138 - pir\|\|G83931 L-lysine 2,3-aminomutase BH2255 [imported] - Bacillus halodurans (strain C-125) gi\|15614818, gi\|... - gi\|15614818\|ref\|NP_243121.1\| L-lysine 2,3-aminomutase [Bacillus halodurans C-125], gi\|10174874\|dbj\|B...	0.0	[5..469]	[4..467]
gi\|89087316, gi\|... - gi\|89097814\|ref\|ZP_01170701.1\| Lysine 2,3-aminomutase [Bacillus sp. NRRL B-14911], gi\|89087316\|gb\|EA...	0.0	[1..469]	[25..493]
KAMA_BACSU - L-lysine 2,3-aminomutase OS=Bacillus subtilis (strain 168) GN=kamA PE=1 SV=1 KAMA_BACSU, YODO... - (O34676) Hypothetical UPF0069 protein yodO, L-lysine 2,3-aminomutase OS=Bacillus subtilis GN=kamA PE... gi\|221319118 - gi\|221319118\|ref\|ZP_03600412.1\| lysine 2,3-aminomutase [Bacillus subtilis subsp. subtilis str. JH642... gi\|221314195 - gi\|221314195\|ref\|ZP_03596000.1\| lysine 2,3-aminomutase [Bacillus subtilis subsp. subtilis str. NCIB ... gi\|221323391 - gi\|221323391\|ref\|ZP_03604685.1\| lysine 2,3-aminomutase [Bacillus subtilis subsp. subtilis str. SMY]	0.0	[6..465]	[6..465]
gi\|52786038, gi\|... - gi\|52786038\|ref\|YP_091867.1\| hypothetical protein BLi02294 [Bacillus licheniformis ATCC 14580], gi\|5...	0.0	[1..465]	[1..465]
gi\|2529467\|gb\|AA... - YokS [Bacillus subtilis] gi\|2529467 - gi\|2529467\|gb\|AAB81159.1\| YokS [Bacillus subtilis]	0.0	[6..465]	[6..465]

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Predicted Domain #1

Region A:
Residues: [1-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHDVYKPNR HWKDIELWKD VTEEQWNDWV WQLTNTIKTL DDLKKVINLT PDEEEGVKIS  60
   61 TKTIPLNITP YYAWLMNPDD PRCPIRMQSV PISEELYKTK YDLEDPLHED EDSPVPGLTH 120
  121 RYPDRVLFLV TNQCSMYCRY CTRRRFSGQI GMGVPKKQLD DAIAYIRETP QVRDVLISGG 180
  181 DGLLINDKIL EYVLKNLREI PHVEIIRIGT RAPVVFPQRI TENLCNIIKK YHPVWLNTHF 240
  241 NTSIEITEES KKACEMLANA GVPVGNQAVI LAGINDSVPI MKKLMHDLVK IRVRPYYIYQ 300
  301 CDLSEGIGHF RAPVSKGLEI IEGLRGHTSG YAVPTFVVDA PGGGGKIALQ PNYLISQSAD 360
  361 KVVLRNFEGV ITTYPEPESY IPGRAEGYFK EIYPNYEEKR SDVGIAGLMS DKKFNLVPDD 420
  421 LQRMNRRKDY EDNETHATLK DKRDKRDQLK DKKYQAQMAK LEENDKKTEG DAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	2a5hA
Description:	2.1 Angstrom X-ray crystal structure of lysine-2,3-aminomutase from Clostridium subterminale SB4, with Michaelis analog (L-alpha-lysine external aldimine form of pyridoxal-5'-phosphate).
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits