YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263516, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263516, gi|....

Description	E-value	Query Range	Subject Range
gi\|133727747, gi... - gi\|153166231\|ref\|ZP_01926850.1\| hypothetical protein LMHG_00097 [Listeria monocytogenes FSL N1-017],... gi\|254852407 - gi\|254852407\|ref\|ZP_05241755.1\| formate/nitrite transporter family protein [Listeria monocytogenes F... gi\|254823817 - gi\|254823817\|ref\|ZP_05228818.1\| formate/nitrite transporter family protein [Listeria monocytogenes F... gi\|153201615, gi... - gi\|254931297\|ref\|ZP_05264656.1\| formate/nitrite transporter family protein [Listeria monocytogenes H... gi\|46880414, gi\|... - gi\|46907147\|ref\|YP_013536.1\| formate/nitrite transporter family protein [Listeria monocytogenes str.... gi\|254878315 - gi\|254878315\|ref\|ZP_05251025.1\| formate/nitrite transporter family protein [Listeria monocytogenes F...	1.0E-73	[1..258]	[1..258]
gi\|47019562, gi\|... - gi\|47092122\|ref\|ZP_00229915.1\| formate/nitrite transporter family protein [Listeria monocytogenes st... gi\|254993893 - gi\|254993893\|ref\|ZP_05276083.1\| formate/nitrite transporter family protein [Listeria monocytogenes F...	1.0E-73	[1..258]	[1..258]
gi\|16799984 - gi\|16799984\|ref\|NP_470252.1\| hypothetical protein lin0912 [Listeria innocua Clip11262] gi\|254898914, gi... - gi\|254898914\|ref\|ZP_05258838.1\| hypothetical protein LmonJ_03835 [Listeria monocytogenes J0161], gi\|... gi\|16802953 - gi\|16802953\|ref\|NP_464438.1\| hypothetical protein lmo0912 [Listeria monocytogenes EGD-e] gi\|254832120, gi... - gi\|254832120\|ref\|ZP_05236775.1\| hypothetical protein Lmon1_12269 [Listeria monocytogenes 10403S], gi... gi\|25322509, gi\|... - pir\|\|AH1188 transporters (formate) homolog lmo0912 [imported] - Listeria monocytogenes (strain EGD-e... gi\|127766011, gi... - gi\|254911598\|ref\|ZP_05261610.1\| hypothetical protein LmonJ2_02290 [Listeria monocytogenes J2818], gi... gi\|47016802, gi\|... - gi\|47094920\|ref\|ZP_00232534.1\| formate/nitrite transporter family protein [Listeria monocytogenes st... gi\|254827858, gi... - gi\|254827858\|ref\|ZP_05232545.1\| hypothetical protein LmonocytogeFSL_05300 [Listeria monocytogenes FS... gi\|254935924, gi... - gi\|254935924\|ref\|ZP_05267621.1\| hypothetical protein LmonF6_02295 [Listeria monocytogenes F6900], gi... gi\|25322510, gi\|... - pir\|\|AH1546 transporters (formate) homolog lin0912 [imported] - Listeria innocua (strain Clip11262)... gi\|224503118 - gi\|224503118\|ref\|ZP_03671425.1\| hypothetical protein LmonFR_11458 [Listeria monocytogenes FSL R2-561...	2.0E-73	[1..258]	[1..258]
gi\|227838883, gi... - gi\|227884131\|ref\|ZP_04001936.1\| formate transporter [Escherichia coli 83972], gi\|227838883\|gb\|EEJ493... gi\|117623122, gi... - gi\|117623122\|ref\|YP_852035.1\| formate transporter [Escherichia coli APEC O1], gi\|115512246\|gb\|ABJ003... gi\|226898318, gi... - gi\|237707108\|ref\|ZP_04537589.1\| formate transporter [Escherichia sp. 3_2_53FAA], gi\|226898318\|gb\|EEH... gi\|26246929, gi\|... - gi\|26246929\|ref\|NP_752969.1\| formate transporter [Escherichia coli CFT073], gi\|26107329\|gb\|AAN79512.... gi\|110641101, gi... - gi\|110641101\|ref\|YP_668831.1\| formate transporter [Escherichia coli 536], gi\|110342693\|gb\|ABG68930.1... gi\|91071579, gi\|... - gi\|91210005\|ref\|YP_539991.1\| formate transporter [Escherichia coli UTI89], gi\|91071579\|gb\|ABE06460.1...	2.0E-72	[2..257]	[121..397]
gi\|52784762, gi\|... - gi\|52784762\|ref\|YP_090591.1\| YrhG [Bacillus licheniformis ATCC 14580], gi\|52347264\|gb\|AAU39898.1\| Yr...	1.0E-71	[1..259]	[1..260]
gi\|221324181 - gi\|221324181\|ref\|ZP_03605475.1\| hypothetical protein BsubsS_14837 [Bacillus subtilis subsp. subtilis... YRHG_BACSU - Uncharacterized transporter YrhG OS=Bacillus subtilis (strain 168) GN=yrhG PE=3 SV=1 gi\|221319900 - gi\|221319900\|ref\|ZP_03601194.1\| hypothetical protein BsubsJ_14693 [Bacillus subtilis subsp. subtilis... YRHG_BACSU - Uncharacterized transporter yrhG OS=Bacillus subtilis GN=yrhG PE=3 SV=1 gi\|221314979 - gi\|221314979\|ref\|ZP_03596784.1\| hypothetical protein BsubsN3_14782 [Bacillus subtilis subsp. subtili...	2.0E-71	[1..259]	[1..260]
gi\|110614460, gi... - gi\|110804912\|ref\|YP_688432.1\| formate transporter [Shigella flexneri 5 str. 8401], gi\|110614460\|gb\|A... gi\|24112312, gi\|... - ref\|NP_706822.1\| probable formate transporter (formate channel 1) [Shigella flexneri 2a str. 301], ...	2.0E-71	[2..257]	[66..342]
gi\|62127131, gi\|... - gi\|62179498\|ref\|YP_215915.1\| formate transporter [Salmonella enterica subsp. enterica serovar Choler...	3.0E-71	[2..257]	[48..324]
gi\|228916197, gi... - gi\|228916197\|ref\|ZP_04079767.1\| Formate/nitrite transporter [Bacillus thuringiensis serovar pulsiens... gi\|65320844 - gi\|65320844\|ref\|ZP_00393803.1\| COG2116: Formate/nitrite family of transporters [Bacillus anthracis s...	7.0E-71	[1..259]	[6..264]
gi\|170717256, gi... - gi\|32029303\|ref\|ZP_00132346.1\| COG2116: Formate/nitrite family of transporters [Haemophilus somnus 2...	8.0E-71	[5..254]	[11..281]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHKPEQIA ELVIEAGVQK VSQTLPAMLI LGFLGGAFIS LGFLLNIRVL GNLPERWGSL  60
   61 VNVLGGAVFP VGLMLVVLAG GELITGNMMS MSMALYAKKI TFVSVLNNWI WITFMNFVGA 120
  121 IFVAYCFGHL GGLTEGDYLN KTVAIAEGKL HESFGRTLIL AIGCNWLVCL ALWLAYGTSD 180
  181 FVGKIIGIWI PIMAFVVIGF QQVVANMFVI SAVIFAGHLT WMDLARNFVP VFIGNVIGGA 240
  241 GFVGFAYYAC YQKQHSNMK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.61
Match:	2b5fA
Description:	Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits