YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263726, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263726, gi|....

Description	E-value	Query Range	Subject Range
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	1.0E-72	[2..464]	[1098..1558]
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	5.0E-72	[2..387]	[970..1382]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	9.0E-72	[4..463]	[40..524]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	9.0E-68	[2..463]	[142..629]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	1.0E-67	[4..463]	[88..567]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	2.0E-67	[2..463]	[139..628]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	2.0E-67	[4..463]	[144..631]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNLKKDLK IRHITMISIG GVIGAGLFVG SGAVVHSAGP GSIVSYALAG LLVVFVMRML  60
   61 GEMAAINPTS GSFATYAREA IGPWAGYTIG WLYWFFWVIV IAIEATAGAG IIQYWIPEIP 120
  121 LWLLSLILTI LLTLTNVFSV KSFGEFEYWF SFIKVISIVL FLCLGLAVIL GFVPGTEAPG 180
  181 TSNLVGQGGF MPNGISSVLL GITVVIFSFM GSEIVAVAAG ESAEPVKAVK TATNSVIWRI 240
  241 LVFFIGSIAV VVTLLPWNSA NILKSPFVAV LEHIGIPAAA QIMNFIVLTA VLSCLNSGLY 300
  301 TNSRMLFSMA ERGDAPKAFL KLNSSGVPVR AVLFGTFFAY IGVVFSYISP DKVFLFLVNA 360
  361 SGGIALLVYL VIAISHLKIR KKMGRVEQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.36
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [390-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLKVKMWFFP YVTYVTIAAI IAVLIAMLAI ESLRSQALLT MLVTVLIIIS YFIFNRNKNS  60
   61 TVLNTKSKNE ESVRF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits