YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49481608, gi\|...
Organism:	Bacillus thuringiensis serovar konkukian str. 97-27
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49481608, gi|....

Description	E-value	Query Range	Subject Range
gi\|163941461, gi... - gi\|89208771\|ref\|ZP_01187259.1\| 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisova...	1.0E-61	[1..288]	[1..288]
gi\|29897421, gi\|... - gi\|30021865\|ref\|NP_833496.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus cereus ... gi\|206732428, gi... - gi\|206972615\|ref\|ZP_03233557.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus ... gi\|218163359, gi... - gi\|218235402\|ref\|YP_002368576.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus... gi\|218898873, gi... - gi\|218898873\|ref\|YP_002447284.1\| putative pyruvate ferredoxin oxidoreductase, beta subunit [Bacillus...	2.0E-61	[1..288]	[1..288]
gi\|10174993, gi\|... - gi\|15614936\|ref\|NP_243239.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Bacillus halodur... gi\|25494511 - pir\|\|E83946 pyruvate synthase beta subunit BH2373 [imported] - Bacillus halodurans (strain C-125)	4.0E-60	[1..288]	[1..288]
gi\|89149392, gi\|... - gi\|89202597\|ref\|ZP_01181313.1\| 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisova...	4.0E-59	[1..288]	[1..288]
gi\|221089890, gi... - gi\|221089890\|ref\|ZP_03559394.1\| pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [Geobaci... gi\|56419837, gi\|... - gi\|56419837\|ref\|YP_147155.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Geobacillus kaus... gi\|229328394, gi... - gi\|229500714\|ref\|ZP_04394360.1\| pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [Geobaci...	3.0E-58	[1..288]	[1..288]
gi\|57866795, gi\|... - gi\|57866795\|ref\|YP_188439.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus e... gi\|251805881, gi... - gi\|251810721\|ref\|ZP_04825194.1\| pyruvate ferredoxin dehydrogenase beta subunit [Staphylococcus epide... gi\|27315431, gi\|... - gi\|27467886\|ref\|NP_764523.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus e...	7.0E-58	[1..288]	[1..288]
gi\|68447348, gi\|... - gi\|70726624\|ref\|YP_253538.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus h...	3.0E-57	[1..288]	[1..288]
gi\|82656421, gi\|... - gi\|82750890\|ref\|YP_416631.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|251802196, gi... - gi\|251814201\|ref\|ZP_04828674.1\| pyruvate ferredoxin dehydrogenase beta subunit [Staphylococcus aureu... gi\|253316427 - gi\|253316427\|ref\|ZP_04839640.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcu... gi\|156979611, gi... - gi\|156979611\|ref\|YP_001441870.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococc... gi\|253733472, gi... - gi\|253733472\|ref\|ZP_04867637.1\| pyruvate ferredoxin dehydrogenase beta subunit [Staphylococcus aureu... gi\|255006077 - gi\|255006077\|ref\|ZP_05144678.2\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcu... gi\|25507040 - pir\|\|E89903 hypothetical protein SA1132 [imported] - Staphylococcus aureus (strain N315) gi\|57286046, gi\|... - gi\|57651860\|ref\|YP_186166.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|87160150\|ref\|... - pyruvate ferredoxin oxidoreductase, beta subunit [Staphylococcus aureus subsp. aureus USA300], pyruv... gi\|87160150, gi\|... - gi\|87160150\|ref\|YP_493880.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|161509456, gi... - gi\|161509456\|ref\|YP_001575115.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococc... gi\|221142524 - gi\|221142524\|ref\|ZP_03567017.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcu... gi\|221138125 - gi\|221138125\|ref\|ZP_03562927.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcu... gi\|15924280, gi\|... - gi\|15924280\|ref\|NP_371814.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|13701090, gi\|... - gi\|15926873\|ref\|NP_374406.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|21204341, gi\|... - gi\|21282902\|ref\|NP_645990.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|49486129, gi\|... - gi\|49486129\|ref\|YP_043350.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a... gi\|150374211, gi... - gi\|151221411\|ref\|YP_001332233.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococc... gi\|90427466, gi\|... - gi\|90583484\|ref\|ZP_01239240.1\| 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisova... gi\|147740849, gi... - gi\|90586594\|ref\|ZP_01242288.1\| 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisova... gi\|269202907\|ref... - 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus aureus subsp. aureus ED98]	3.0E-57	[1..288]	[1..288]
gi\|227558490, gi... - gi\|227558490\|ref\|ZP_03988537.1\| pyruvate ferredoxin dehydrogenase beta subunit [Staphylococcus aureu... gi\|227851346, gi... - gi\|227900283\|ref\|ZP_04018088.1\| pyruvate ferredoxin dehydrogenase beta subunit [Staphylococcus aureu... gi\|49483453, gi\|... - gi\|49483453\|ref\|YP_040677.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Staphylococcus a...	6.0E-57	[1..288]	[1..288]
gi\|89084582, gi\|... - gi\|89100707\|ref\|ZP_01173563.1\| ferrodoxin oxidoreductase beta subunit [Bacillus sp. NRRL B-14911], g...	7.0E-57	[1..288]	[1..288]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFKDFRNS VKPNWCPGCG DFSVQAAIQR AAANVGLNPD ELAVISGIGC SGRISGYINS  60
   61 YGVHSIHGRA LPIAQGVKMA NRDLTVIASG GDGDGFAIGM GHTIHSIRRN IDITYIVMDN 120
  121 QIYGLTKGQT SPRSEAGFKT KSTPQGSIEP SLNVMEMALT AGATFVAQSF SSDLKELTQI 180
  181 IEAGINHKGF SLINVFSPCV TYNKVNTYDW FKENLTKLST VEGYDPSNRM MAMQTLMENN 240
  241 GLVTGLIYQN TAQPSYQELV KGYSEKPLVQ SDLNMDQKMF DELVAEFM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1qgdA
Description:	Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.62581591393304	bayes_pls_golite062009
oxidoreductase activity	1.76278237247276	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.33446932713773	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: