YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258465, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	1433 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258465, gi|....

Description	E-value	Query Range	Subject Range
gi\|49478392, gi\|... - gi\|49478392\|ref\|YP_037879.1\| DNA polymerase III PolC [Bacillus thuringiensis serovar konkukian str. ...	0.0	[1..1433]	[1..1433]
gi\|47569095, gi\|... - gi\|47569095\|ref\|ZP_00239784.1\| DNA polymerase III, alpha subunit, Gram-positive type [Bacillus cereu...	0.0	[1..1433]	[1..1433]
DPO3_BACCR - DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 ... gi\|229146389, gi... - gi\|229146389\|ref\|ZP_04274760.1\| DNA polymerase III polC-type [Bacillus cereus BDRD-ST24], gi\|2286370...	0.0	[1..1433]	[3..1435]
gi\|75760862, gi\|... - gi\|75760862\|ref\|ZP_00740876.1\| DNA polymerase III alpha subunit [Bacillus thuringiensis serovar isra...	0.0	[1..1433]	[3..1435]
gi\|152976184, gi... - gi\|89203212\|ref\|ZP_01181903.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	0.0	[1..1433]	[1..1433]
gi\|163863752, gi... - gi\|89208601\|ref\|ZP_01187099.1\| DNA polymerase III, epsilon subunit:DNA polymerase III, alpha subunit...	0.0	[1..1433]	[1..1433]
DPO3_BACSU - DNA polymerase III polC-type OS=Bacillus subtilis GN=polC PE=1 SV=2 gi\|221318783 - gi\|221318783\|ref\|ZP_03600077.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313860 - gi\|221313860\|ref\|ZP_03595665.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB... gi\|221323055 - gi\|221323055\|ref\|ZP_03604349.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] DPO3_BACSU - DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168) GN=polC PE=1 SV=2	0.0	[1..1433]	[1..1437]
gi\|143342 - gi\|143342\|gb\|AAA22666.1\| polymerase III	0.0	[1..1433]	[1..1437]
DPO3_BACHD - DNA polymerase III polC-type OS=Bacillus halodurans GN=polC PE=3 SV=1 DPO3_BACHD - DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / J...	0.0	[3..1433]	[1..1433]
gi\|56419793, gi\|... - gi\|56419793\|ref\|YP_147111.1\| DNA polymerase III PolC [Geobacillus kaustophilus HTA426], gi\|56379635\|...	0.0	[4..1433]	[13..1444]

Back

Predicted Domain #1

Region A:
Residues: [1-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTNEQKER FQILLQQLQI PDDLINQYLQ GGGIERLVID KANKSWHFNL QVPRILPTEL  60
   61 YELLETKLKQ SFSHIARTTF ALETENKQFT EEEVRAYWPL CTERITFSPM FAYLKKQLPQ 120
  121 VNGVKLLINV NNELESTALK KNVAKPVGDQ YEAFGFPRFQ LDTHIQQNTE EMQKFREQTQ 180
  181 QEDRERVIQA MEEMAKKQAE ESSVVHEGPI TLGYLIKPDE EITPMREIQD EERRKTVQGY 240
  241 VFHVETKELR SGRTLLTLKI TDYTDSIMIK MFSRDKEDIP MLQSLKKGMW VKARGSVQND 300
  301 TFVRDLVMIA NDINEITGPS RKDKAPEGEK RVELHLHTPM SQMD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.522879
Match:	1epwA
Description:	Botulinum neurotoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring phosphorus-containing groups	1.74384449514357	bayes_pls_golite062009
transferase activity	1.70261163116511	bayes_pls_golite062009
binding	1.16824006369362	bayes_pls_golite062009
nucleic acid binding	0.063915676531347	bayes_pls_golite062009
protein binding	0.0610567034718369	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [345-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVTPVSKLVA QAGKWGHEAI AVTDHAVAQS FPEAYSAGKK AGVKVIYGVE ANLVNDGVPI  60
   61 AYNEEHRLLA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.94
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [415-523]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DETYVVFDVE TTGLSAVYDT VIELAAVKVK GGEIIDRFES FANPHQPLSA TIIELTGITD  60
   61 DMLTDAPEVD EVFKKFEEWM GDHTLVAHNA SFDMGFINVG FKKAGLEKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	2p1jA
Description:	No description for 2p1jA was found.

Predicted Domain #4

Region A:
Residues: [524-1433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNPVIDTLEL ARFLFPEMKN HRLNTLCKKM DIELTQHHRA IYDTEATGYL LVKMLKDVIE  60
   61 KGFEYHDQLN DSMGQGDAYK RGRPSHMTLL ATSDVGLKNL YKLVSYSHLN YFYRVPRVPR 120
  121 SLLKKYREGI LVGTACDKGE VFEAMMQKAP EEVEEIAQFY DYIEVMPPEV LRHLVERELV 180
  181 RDEGQLKTII SNLVKLGETL DKPVVATGNV HYLDPEDAMY RKILVSSQGG ANPLNRHSLP 240
  241 PVHFRTTDEM LECFSFLGED VAKEIVVTNT QKIASLIGDV HPVKDDLYTP KIEGADDETR 300
  301 DMSYKMARSI YGEELPEIVE ARLEKELKSI IGHGFAVIYL ISHKLVKKSL VDGYLVGSRG 360
  361 SVGSSFVATM MEITEVNPLP PHYVCPKCKQ SEFFNDGSVG SGFDLPDKEC PTCNIPYVKD 420
  421 GHDIPFETFL GFKGDKVPDI DLNFSGEYQP RAHNYTKVLF GEDYVYRAGT IGTVAEKTAY 480
  481 GYVKGYANDH NLTIRNAEID RLVAGCTGVK RTTGQHPGGI IVVPDYMDIF DFSPIQYPAD 540
  541 SIGAEWRTTH FDFHSIHDNL LKLDILGHDD PTVIRMLQDL SGIDPKTIPT DDPEVMKIFS 600
  601 GPESLGVTEE QINCKTGTLG IPEFGTKFVR QMLEETKPTT FSELVQISGL SHGTDVWLGN 660
  661 ANELIYNGTC TLSEVIGCRD DIMVYLIYQG LDPSLAFKIM ESVRKGKGVP EEWEEDMKSN 720
  721 NVPGWYIDSC KKIKYMFPKA HAAAYVLMAV RIAYFKVHFA LLFYAAYFTV RADDFDVEAM 780
  781 AKGSASIRAR IDEIAQKGLD AAPKEKSLLT VLEMTLEMCE RGYSFQKVDL YRSHATDFII 840
  841 DGDSLIPPFN AVPGLGTNAA LSIVEARKNG EFLSKEDLQQ RSKVSKTIIE YLDSQGCLGD 900
  901 LPDQNQLSLF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2hnhA
Description:	No description for 2hnhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: