YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263826, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263826, gi|....

Description	E-value	Query Range	Subject Range
gi\|163941560, gi... - gi\|89208597\|ref\|ZP_01187095.1\| Phosphatidate cytidylyltransferase [Bacillus weihenstephanensis KBAB4...	1.0E-47	[1..263]	[1..263]
gi\|222097267, gi... - gi\|222097267\|ref\|YP_002531324.1\| phosphatidate cytidylyltransferase [Bacillus cereus Q1], gi\|2212413... gi\|217961242, gi... - gi\|217961242\|ref\|YP_002339810.1\| phosphatidate cytidylyltransferase [Bacillus cereus AH187], gi\|2170... gi\|42738840, gi\|... - gi\|42782913\|ref\|NP_980160.1\| phosphatidate cytidylyltransferase [Bacillus cereus ATCC 10987], gi\|427...	2.0E-47	[1..263]	[1..263]
gi\|229186061, gi... - gi\|229186061\|ref\|ZP_04313231.1\| Phosphatidate cytidylyltransferase [Bacillus cereus BGSC 6E1], gi\|22... gi\|49329951, gi\|... - gi\|49478395\|ref\|YP_037883.1\| phosphatidate cytidylyltransferase [Bacillus thuringiensis serovar konk... gi\|229092862, gi... - gi\|229092862\|ref\|ZP_04223996.1\| Phosphatidate cytidylyltransferase [Bacillus cereus Rock3-42], gi\|22... gi\|196024460, gi... - gi\|196044425\|ref\|ZP_03111660.1\| phosphatidate cytidylyltransferase [Bacillus cereus 03BB108], gi\|196... gi\|228916459, gi... - gi\|228916459\|ref\|ZP_04080025.1\| Phosphatidate cytidylyltransferase [Bacillus thuringiensis serovar p... gi\|196042174, gi... - gi\|196042174\|ref\|ZP_03109457.1\| phosphatidate cytidylyltransferase [Bacillus cereus NVH0597-99], gi\|... gi\|225865803, gi... - gi\|225865803\|ref\|YP_002751181.1\| phosphatidate cytidylyltransferase [Bacillus cereus 03BB102], gi\|22...	3.0E-47	[1..263]	[1..263]
gi\|30021910, gi\|... - gi\|30021910\|ref\|NP_833541.1\| phosphatidate cytidylyltransferase [Bacillus cereus ATCC 14579], gi\|298... gi\|229180098, gi... - gi\|229180098\|ref\|ZP_04307442.1\| Phosphatidate cytidylyltransferase [Bacillus cereus 172560W], gi\|228... gi\|228672069, gi... - gi\|229111293\|ref\|ZP_04240846.1\| Phosphatidate cytidylyltransferase [Bacillus cereus Rock1-15], gi\|22... gi\|228954098, gi... - gi\|228954098\|ref\|ZP_04116127.1\| Phosphatidate cytidylyltransferase [Bacillus thuringiensis serovar k...	4.0E-47	[1..263]	[1..263]
gi\|177652142, gi... - gi\|177652142\|ref\|ZP_02934688.1\| phosphatidate cytidylyltransferase [Bacillus anthracis str. A0174], ... gi\|65321149 - gi\|65321149\|ref\|ZP_00394108.1\| COG0575: CDP-diglyceride synthetase [Bacillus anthracis str. A2012] gi\|218536805, gi... - gi\|218904950\|ref\|YP_002452784.1\| phosphatidate cytidylyltransferase [Bacillus cereus AH820], gi\|2185... gi\|167639827, gi... - gi\|167639827\|ref\|ZP_02398096.1\| phosphatidate cytidylyltransferase [Bacillus anthracis str. A0193], ... gi\|170128219, gi... - gi\|170706801\|ref\|ZP_02897259.1\| phosphatidate cytidylyltransferase [Bacillus anthracis str. A0389], ... gi\|167528791, gi... - gi\|167635834\|ref\|ZP_02394143.1\| phosphatidate cytidylyltransferase [Bacillus anthracis str. A0442], ...	8.0E-47	[2..263]	[4..265]
gi\|206978511, gi... - gi\|206978511\|ref\|ZP_03239368.1\| phosphatidate cytidylyltransferase [Bacillus cereus H3081.97], gi\|20... gi\|47554262, gi\|... - gi\|47569100\|ref\|ZP_00239789.1\| phosphatidate cytidylyltransferase [Bacillus cereus G9241], gi\|475542...	1.0E-46	[2..263]	[4..265]
gi\|74491651, gi\|... - gi\|75760867\|ref\|ZP_00740881.1\| Phosphatidate cytidylyltransferase [Bacillus thuringiensis serovar is...	2.0E-46	[2..263]	[4..265]
gi\|3319758, gi\|2... - gi\|3319758\|emb\|CAA19924.1\| putative integral membrane protein [Streptomyces coelicolor A3(2)], gi\|21... gi\|7480824 - pir\|\|T35470 probable integral membrane protein - Streptomyces coelicolor	6.0E-46	[37..260]	[164..385]
gi\|152976188, gi... - gi\|89203225\|ref\|ZP_01181916.1\| Phosphatidate cytidylyltransferase [Bacillus cereus subsp. cytotoxis ...	2.0E-45	[1..259]	[1..259]
gi\|134111320, gi... - gi\|50258466\|gb\|EAL21155.1\| hypothetical protein CNBD5310 [Cryptococcus neoformans var. neoformans B-... gi\|57226657, gi\|... - gi\|58266536\|ref\|XP_570424.1\| phosphatidate cytidylyltransferase [Cryptococcus neoformans var. neofor...	2.0E-44	[1..260]	[258..601]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQRIITGVV AAALFIPIVI YGGVPFTVLV YALASIGLYE LIRMNKLTLI SVPTVLAALL  60
   61 LWIILIPSSA SELFTWIGLG KLEITFVIVL LLLSYTVL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [99-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKNTFTFDNA SFLLMATTYV AMGFLYLNET RILGIKYVFC ALFVIWATDS GAYFVGKALG  60
   61 KRKLWPEISP NKTIEGSLGG IVCGIIVALV YNMFFPVESN VLILIALTII ISIFGQIGDL 120
  121 VQSAFKRHYG VKDSGTILPG HGGILDRTDS WLFVLPILYF LLQYN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits