YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263869, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263869, gi|....

Description	E-value	Query Range	Subject Range
gi\|228615012, gi... - gi\|229168606\|ref\|ZP_04296329.1\| Methionyl-tRNA formyltransferase [Bacillus cereus AH621], gi\|2286150... gi\|229013050, gi... - gi\|229013050\|ref\|ZP_04170215.1\| Methionyl-tRNA formyltransferase [Bacillus mycoides DSM 2048], gi\|22... FMT_BACWK - Methionyl-tRNA formyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=fmt PE=3 SV=1	0.0	[1..314]	[1..314]
gi\|228818790, gi... - gi\|228940954\|ref\|ZP_04103513.1\| Methionyl-tRNA formyltransferase [Bacillus thuringiensis serovar ber... gi\|228980473, gi... - gi\|228980473\|ref\|ZP_04140783.1\| Methionyl-tRNA formyltransferase [Bacillus thuringiensis Bt407], gi\|... gi\|228785908, gi... - gi\|228973883\|ref\|ZP_04134459.1\| Methionyl-tRNA formyltransferase [Bacillus thuringiensis serovar thu... FMT_BACC2 - Methionyl-tRNA formyltransferase OS=Bacillus cereus (strain G9842) GN=fmt PE=3 SV=1 gi\|75762656, gi\|... - gi\|75762656\|ref\|ZP_00742498.1\| Methionyl-tRNA formyltransferase [Bacillus thuringiensis serovar isra...	0.0	[1..314]	[1..314]
FMT_BACCQ - Methionyl-tRNA formyltransferase OS=Bacillus cereus (strain Q1) GN=fmt PE=3 SV=1 gi\|47569493, gi\|... - gi\|47569493\|ref\|ZP_00240173.1\| methionyl-tRNA formyltransferase [Bacillus cereus G9241], gi\|47553822... gi\|206976708, gi... - gi\|206976708\|ref\|ZP_03237612.1\| methionyl-tRNA formyltransferase [Bacillus cereus H3081.97], gi\|2067... gi\|228643073, gi... - gi\|229140512\|ref\|ZP_04269067.1\| Methionyl-tRNA formyltransferase [Bacillus cereus BDRD-ST26], gi\|228... FMT_BACC7 - Methionyl-tRNA formyltransferase OS=Bacillus cereus (strain AH187) GN=fmt PE=3 SV=1	0.0	[1..314]	[1..314]
FMT_BACCR - Methionyl-tRNA formyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15...	0.0	[1..314]	[1..314]
FMT_BACHK - Methionyl-tRNA formyltransferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=fmt PE... FMT_BACHK - Methionyl-tRNA formyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=fmt PE=3 SV=1	0.0	[1..314]	[1..314]
FMT_BACLD - Methionyl-tRNA formyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / ...	0.0	[1..313]	[1..313]
FMT_BACSU - Methionyl-tRNA formyltransferase OS=Bacillus subtilis GN=fmt PE=3 SV=2 FMT_BACSU - Methionyl-tRNA formyltransferase OS=Bacillus subtilis (strain 168) GN=fmt PE=3 SV=2 gi\|221318697 - gi\|221318697\|ref\|ZP_03599991.1\| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ... gi\|221313773 - gi\|221313773\|ref\|ZP_03595578.1\| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ... gi\|221322968 - gi\|221322968\|ref\|ZP_03604262.1\| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ...	0.0	[1..311]	[1..311]
gi\|1772500\|emb\|C... - Met-tRNAi formyl transferase [Bacillus subtilis] gi\|1772500 - gi\|1772500\|emb\|CAA71350.1\| Met-tRNAi formyl transferase [Bacillus subtilis]	0.0	[1..311]	[1..311]
FMT_BACHD - Methionyl-tRNA formyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344... FMT_BACHD - Methionyl-tRNA formyltransferase OS=Bacillus halodurans GN=fmt PE=3 SV=1	0.0	[2..313]	[1..314]
FMT_ECODH - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=fmt PE=3 SV=1 FMT_ECOHS - Methionyl-tRNA formyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=fmt PE=3 SV=1 gi\|85676754, gi\|... - gi\|89110723\|ref\|AP_004503.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [E... EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... FMT_ECOLI - Methionyl-tRNA formyltransferase (EC 2.1.2.9) - Escherichia coli EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... gi\|124498111, gi... - gi\|124532221\|ref\|ZP_01702159.1\| methionyl-tRNA formyltransferase [Escherichia coli B], gi\|124498111\|... gi\|194439996, gi... - gi\|83584646\|ref\|ZP_00923313.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli 101-1], g... FMT_ECOLC - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fmt P... FMT_ECOBW - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fmt PE=3 SV=1 gi\|242378814, gi... - gi\|251786541\|ref\|YP_003000845.1\| hypothetical protein B21_03089 [Escherichia coli BL21], gi\|24237881... gi\|253979272, gi... - gi\|254289965\|ref\|YP_003055713.1\| methionyl-tRNA formyltransferase [Escherichia coli BL21(DE3)], gi\|2... gi\|254038448, gi... - gi\|254038448\|ref\|ZP_04872504.1\| methionyl-tRNA formyltransferase [Escherichia sp. 1_1_43], gi\|226838... gi\|253975116, gi... - gi\|254163215\|ref\|YP_003046323.1\| methionyl-tRNA formyltransferase [Escherichia coli B str. REL606], ...	0.0	[2..310]	[5..314]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKVVFMGTP DFSVPVLRRL IEDGYDVIGV VTQPDRPVGR KKVLTPTPVK VEAEKHGIPV  60
   61 LQPLRIREKD EYEKVLALEP DLIVTAAFGQ IVPNEILEAP KYGCINVHAS LLPELRGGAP 120
  121 IHYAIMEGKE KTGITIMYMV EKLDAGDILT QVEVEIEERE TTGSLFDKLS EAGAHLLSKT 180
  181 VPLLIQGKLE PIKQNEEEVT FAYNIKREQE KIDWTKTGEE VYNHIRGLNP WPVAYTTLAG 240
  241 QVVKVWWGEK VPVTKSAEAG TIVAIEEDGF VVATGNETGV KITELQPSGK KRMSCSQFLR 300
  301 GTKPEIGTKL GENA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1fmtA
Description:	Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydroxymethyl-, formyl- and related transferase activity	5.69633962913959	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	5.65386414092027	bayes_pls_golite062009
methyltransferase activity	2.76628443233732	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	2.70337357342253	bayes_pls_golite062009
catalytic activity	2.53047786804923	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	2.44659532474253	bayes_pls_golite062009
ligase activity	1.96240394924455	bayes_pls_golite062009
transferase activity	1.21569993951472	bayes_pls_golite062009
DNA N-glycosylase activity	0.44549344555131	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	0.274274040236549	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	0.260905445900329	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: