YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263914, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263914, gi|....

Description	E-value	Query Range	Subject Range
MURD_BACHK - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus thuringiensis subsp. konkukian GN=murD P... gi\|228812152, gi... - gi\|228947632\|ref\|ZP_04109922.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus thuringien... gi\|228660202, gi... - gi\|229123426\|ref\|ZP_04252630.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus 95/... MURD_BACC3 - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus cereus (strain 03BB102) GN=murD PE=3 SV=... gi\|228935228, gi... - gi\|228935228\|ref\|ZP_04098054.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus thuringien... MURD_BACHK - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus thuringiensis subsp. konkukian (strain 9... gi\|196035806, gi... - gi\|196035806\|ref\|ZP_03103208.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W],... MURD_BACAH - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus thuringiensis (strain Al Hakam) GN=murD ... gi\|196038844, gi... - gi\|196038844\|ref\|ZP_03106152.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus NVH...	0.0	[1..450]	[1..450]
MURD_BACC1 - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=...	0.0	[1..450]	[1..450]
gi\|228799646, gi... - gi\|228960130\|ref\|ZP_04121794.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus thuringien... gi\|229129190, gi... - gi\|229129190\|ref\|ZP_04258163.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus BDR... gi\|229146484, gi... - gi\|229146484\|ref\|ZP_04274855.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus BDR... MURD_BACCR - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM...	0.0	[1..450]	[1..450]
gi\|47565784, gi\|... - gi\|47565784\|ref\|ZP_00236823.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus G924... gi\|228772651, gi... - gi\|228987057\|ref\|ZP_04147182.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus thuringien...	1.0E-99	[1..450]	[1..450]
MURD_BACWK - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus weihenstephanensis (strain KBAB4) GN=mur...	3.0E-99	[1..450]	[1..450]
MURD_STRMU - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus mutans serotype c (strain ATCC 7006... MURD_STRMU - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus mutans GN=murD PE=3 SV=1	2.0E-96	[1..449]	[1..448]
MURD_BACCN - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 1100...	1.0E-95	[1..450]	[1..451]
gi\|77408374, gi\|... - gi\|77408374\|ref\|ZP_00785114.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalac...	3.0E-95	[1..449]	[1..448]
MURD_STRA5 - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus agalactiae serotype V (strain ATCC ... MURD_STRA5 - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus agalactiae serotype V GN=murD PE=1 ... MURD_STRA1 - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus agalactiae serotype Ia (strain ATCC... gi\|77175817, gi\|... - gi\|77405595\|ref\|ZP_00782685.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalac... MURD_STRA1 - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus agalactiae serotype Ia GN=murD PE=3... gi\|77411435, gi\|... - gi\|77411435\|ref\|ZP_00787781.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalac... gi\|76798291, gi\|... - gi\|76798291\|ref\|ZP_00780538.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalac...	4.0E-95	[1..449]	[1..448]
MURD_STRA3 - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus agalactiae serotype III GN=murD PE=... MURD_STRA3 - UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus agalactiae serotype III (strain NEM... gi\|77413561, gi\|... - gi\|77413561\|ref\|ZP_00789749.1\| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus agalac...	4.0E-95	[1..449]	[1..448]

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Predicted Domain #1

Region A:
Residues: [1-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVTEFQNK NILVLGIAKS GYAAATLLQK LGANVIVNDG KPLAENVLAA ELQAKGMDVV  60
   61 CGGHPLELLE RNISLVVKNP GIPYSNPILV AAKEKQIPIV TEVELAYRIS EAPFVGITGS 120
  121 NGKTTTTMLT FEMLKEGQKH PVIAGNIGTV ACEVAQDAKE NEVVVTELSS FQLMGVELFQ 180
  181 PKIAAFLNLF EAHLDYHGTK KEYGLAKANI FKNQTENDYS VINADDADVM ALSAYSKGQK 240
  241 VLFSTTKEIE DGACIKDNAL YFKAEKVVEV DDIVLPGQHN LENILAAMSI AKLLGVSNEA 300
  301 ITAVLKRFTG VKHRLEYVTT INNRKFYNDS KATNMLATEK ALSAFTQPTV LLAGGLDRGN 360
  361 EFDDLIPYFK NVKAIVTFGQ TAPKLVRAAE KAGLDTIESV DTLDEAVVKA YAHSTDGDVI 420
  421 LLSPACASWD QFKTFEERGD IFIQAVHKLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.69897
Match:	2jffA
Description:	No description for 2jffA was found.

Predicted functions:

Term	Confidence	Notes
acid-amino acid ligase activity	4.86493054281191	bayes_pls_golite062009
catalytic activity	3.03081854683329	bayes_pls_golite062009
UDP-N-acetylmuramate-L-alanine ligase activity	2.62956763198067	bayes_pls_golite062009
UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity	2.38541436302257	bayes_pls_golite062009
ligase activity	2.2556848409907	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	2.19206014001612	bayes_pls_golite062009
UDP-N-acetylmuramoylalanine-D-glutamate ligase activity	1.471039191151	bayes_pls_golite062009
UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity	1.15437935952018	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: