YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258662, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258662, gi|....

Description	E-value	Query Range	Subject Range
gi\|47557101, gi\|... - gi\|47565821\|ref\|ZP_00236860.1\| cytochrome oxidase assembly protein [Bacillus cereus G9241], gi\|47557... CTAA_BACC1 - Heme A synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=ctaA PE=3 SV=1	7.0E-71	[1..311]	[1..311]
gi\|228857196, gi... - gi\|228902452\|ref\|ZP_04066606.1\| Heme A synthase [Bacillus thuringiensis IBL 4222], gi\|228857196\|gb\|E... gi\|74488290, gi\|... - gi\|75764221\|ref\|ZP_00743780.1\| Heme O monooxygenase [Bacillus thuringiensis serovar israelensis ATCC...	8.0E-70	[1..311]	[1..311]
gi\|45198530, gi\|... - gi\|45198530\|ref\|NP_985559.1\| AFR012Cp [Ashbya gossypii ATCC 10895], gi\|44984481\|gb\|AAS53383.1\| AFR01... gi\|44984481 - gi\|44984481\|gb\|AAS53383.1\| AFR012Cp [Ashbya gossypii ATCC 10895]	1.0E-69	[3..301]	[84..457]
gi\|229111416, gi... - gi\|229111416\|ref\|ZP_04240968.1\| Heme A synthase [Bacillus cereus Rock1-15], gi\|228672032\|gb\|EEL27324... gi\|228723725, gi... - gi\|229047631\|ref\|ZP_04193220.1\| Heme A synthase [Bacillus cereus AH676], gi\|228723725\|gb\|EEL75081.1\|... gi\|228637150, gi... - gi\|229146517\|ref\|ZP_04274888.1\| Heme A synthase [Bacillus cereus BDRD-ST24], gi\|228637150\|gb\|EEK9360... gi\|229129223, gi... - gi\|229129223\|ref\|ZP_04258196.1\| Heme A synthase [Bacillus cereus BDRD-Cer4], gi\|228654460\|gb\|EEL1032... CTAA_BACCR - Heme A synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 ...	2.0E-69	[1..311]	[1..311]
gi\|60468533, gi\|... - gi\|60468533\|gb\|EAL66536.1\| cytochrome c oxidase assembly protein [Dictyostelium discoideum], gi\|3420... gi\|60468533, gi\|... - gi\|66812926\|ref\|XP_640642.1\| cytochrome c oxidase assembly protein [Dictyostelium discoideum AX4], g...	8.0E-68	[2..295]	[114..479]
CTAA_BACWK - Heme A synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=ctaA PE=3 SV=1	8.0E-67	[1..311]	[1..311]
gi\|49643553 - gi\|49643553\|emb\|CAG99505.1\| KLLA0E10385p [Kluyveromyces lactis] gi\|49643553, gi\|... - gi\|50308827\|ref\|XP_454418.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643553\|emb\|CAG9950...	2.0E-66	[3..301]	[95..468]
gi\|65321342, gi\|... - gi\|65321342\|ref\|ZP_00394301.1\| COG1612: Uncharacterized protein required for cytochrome oxidase asse...	1.0E-64	[1..295]	[1..295]
gi\|73998619 - gi\|73998619\|ref\|XP_534986.2\| PREDICTED: similar to COX15 homolog isoform 1 precursor [Canis familiar...	5.0E-64	[3..295]	[70..410]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRFIKWLAV ITSLDLLIVL LGGALVTKTG SGQGCGKSWP LCNGEFVPSN LSMETIIELS  60
   61 HRLTSGSAGI LVTLLCILSW KYYKHVRETK TLAILSFVFL VAQALMGAAA VVWGQMPAVL 120
  121 AIHFGISLIS FASVILLTCL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [141-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFEIDQKFDA RSLIMDKKMK FHIYGVTIYC YLVVYTGALV RHERASLACP DFPLCSKNRP  60
   61 MPTQLHEWVQ MGHRLAAMLI FVWILYAMIL AIRHYKQQPV VYWGWIISFI LVTLQAIVGI 120
  121 LVVFTNASLA MALLHSLFIS CLFAVLCYLV MLGTRSKVNA KEAASTSKQT K

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.0
Match:	1kqfC
Description:	Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.330594893986547	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: