YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264050, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264050, gi|....

Description	E-value	Query Range	Subject Range
gi\|86554803, gi\|... - gi\|86606261\|ref\|YP_475024.1\| potassium transporter, voltage-gated ion channel (VIC) family [Cyanobac... gi\|86554803, gi\|... - gi\|86606261\|ref\|YP_475024.1\| VIC family potassium channel protein [Synechococcus sp. JA-3-3Ab], gi\|8...	1.0E-36	[1..220]	[117..345]
gi\|86609264, gi\|... - gi\|86609264\|ref\|YP_478026.1\| VIC family potassium channel protein [Synechococcus sp. JA-2-3B'a(2-13)... gi\|86609264 - gi\|86609264\|ref\|YP_478026.1\| potassium transporter, voltage-gated ion channel (VIC) family [Cyanobac...	2.0E-36	[1..220]	[117..345]
gi\|186685052, gi... - gi\|23129256\|ref\|ZP_00111088.1\| COG1226: Kef-type K+ transport systems, predicted NAD-binding compone...	3.0E-36	[1..220]	[96..324]
gi\|67857122, gi\|... - gi\|67921005\|ref\|ZP_00514524.1\| TrkA-N:TrkA-C:TrkA-C [Crocosphaera watsonii WH 8501], gi\|67857122\|gb\|...	2.0E-35	[1..220]	[113..341]
gi\|75703660, gi\|... - gi\|75909935\|ref\|YP_324231.1\| hypothetical protein Ava_3731 [Anabaena variabilis ATCC 29413], gi\|7570...	4.0E-35	[1..220]	[96..324]
gi\|86168315, gi\|... - gi\|87123746\|ref\|ZP_01079596.1\| putative potassium channel, VIC family protein [Synechococcus sp. RS9...	4.0E-35	[1..220]	[113..340]
gi\|17130425, gi\|... - gi\|17228574\|ref\|NP_485122.1\| hypothetical protein all1079 [Nostoc sp. PCC 7120], gi\|17130425\|dbj\|BAB... gi\|25314198 - pir\|\|AD1941 hypothetical protein all1079 [imported] - Nostoc sp. (strain PCC 7120)	6.0E-35	[1..220]	[96..324]
gi\|28204321, gi\|... - gi\|28211879\|ref\|NP_782823.1\| trk system potassium uptake protein trkA [Clostridium tetani E88], gi\|2...	7.0E-35	[5..219]	[3..217]
gi\|78044977, gi\|... - gi\|78044977\|ref\|YP_360403.1\| potassium uptake protein KtrA [Carboxydothermus hydrogenoformans Z-2901...	1.0E-34	[4..218]	[2..216]
gi\|78169604, gi\|... - gi\|78185310\|ref\|YP_377745.1\| VIC family potassium channel protein [Synechococcus sp. CC9902], gi\|781...	1.0E-34	[1..220]	[113..340]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEKEKEFAV IGLGRFGGSI CRELAQLGME VMAIDSDEDK INEFANIASH AVIADSTDEM  60
   61 VLKSLGIRNF DHVVVAIGDN LNSSILTTLI LKELGVKNIT VKAQNDYHEK VLSKIGADHI 120
  121 VHPERDMGKR IANNIASSNV LDYLELSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.30103
Match:	2hmsA
Description:	No description for 2hmsA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.40143066098294	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.794265596378362	bayes_pls_golite062009
potassium ion transmembrane transporter activity	0.7917593970345	bayes_pls_golite062009
cation transmembrane transporter activity	0.667941911014379	bayes_pls_golite062009
ion transmembrane transporter activity	0.644377496622781	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.455628854268609	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.439757800700606	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.189869347204878	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [149-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHSIVEIIAN KKIDGHSLIE LDIRAKFGLN IVAIKRGKEV IVSPRATENI QAGDILIVIG  60
   61 HDDEVDRFKH FLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	1vctA
Description:	Crystal structure of putative potassium channel related protein from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: