YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264078, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264078, gi|....

Description	E-value	Query Range	Subject Range
gi\|152025170, gi... - gi\|89202284\|ref\|ZP_01181011.1\| comI; possible competence-specific nuclease [Bacillus cereus subsp. c...	3.0E-67	[1..144]	[1..144]
gi\|217961493, gi... - gi\|217961493\|ref\|YP_002340063.1\| competence-specific nuclease [Bacillus cereus AH187], gi\|217067196\|... gi\|228642710, gi... - gi\|229140737\|ref\|ZP_04269284.1\| DNA-entry nuclease [Bacillus cereus BDRD-ST26], gi\|228642710\|gb\|EEK9... gi\|206977390, gi... - gi\|206977390\|ref\|ZP_03238286.1\| competence-specific nuclease [Bacillus cereus H3081.97], gi\|20674438... gi\|42739030, gi\|... - gi\|42783102\|ref\|NP_980349.1\| competence-specific nuclease [Bacillus cereus ATCC 10987], gi\|42739030\|... gi\|228585286, gi... - gi\|229198126\|ref\|ZP_04324835.1\| DNA-entry nuclease [Bacillus cereus m1293], gi\|228585286\|gb\|EEK43395...	2.0E-66	[1..144]	[1..144]
gi\|49480836, gi\|... - gi\|49480836\|ref\|YP_038065.1\| competence-specific nuclease [Bacillus thuringiensis serovar konkukian ...	3.0E-65	[1..144]	[1..144]
gi\|74491610, gi\|... - gi\|75760906\|ref\|ZP_00740917.1\| DNA-entry nuclease [Bacillus thuringiensis serovar israelensis ATCC 3... gi\|228805409, gi... - gi\|228954281\|ref\|ZP_04116308.1\| DNA-entry nuclease [Bacillus thuringiensis serovar kurstaki str. T03... gi\|228818498, gi... - gi\|228941168\|ref\|ZP_04103722.1\| DNA-entry nuclease [Bacillus thuringiensis serovar berliner ATCC 107... gi\|228671861, gi... - gi\|229111479\|ref\|ZP_04241030.1\| DNA-entry nuclease [Bacillus cereus Rock1-15], gi\|228671861\|gb\|EEL27... gi\|228980692, gi... - gi\|228980692\|ref\|ZP_04140998.1\| DNA-entry nuclease [Bacillus thuringiensis Bt407], gi\|228779031\|gb\|E...	5.0E-65	[1..144]	[5..148]
gi\|30022093, gi\|... - gi\|30022093\|ref\|NP_833724.1\| DNA-entry nuclease [Bacillus cereus ATCC 14579], gi\|29897650\|gb\|AAP1092...	2.0E-64	[1..144]	[1..144]
NUCA_BACSU - DNA-entry nuclease OS=Bacillus subtilis GN=nucA PE=4 SV=2 NUCA_BACSU - DNA-entry nuclease OS=Bacillus subtilis (strain 168) GN=nucA PE=4 SV=2	3.0E-61	[25..144]	[28..147]
gi\|228747981, gi... - gi\|229013214\|ref\|ZP_04170355.1\| DNA-entry nuclease [Bacillus mycoides DSM 2048], gi\|228747981\|gb\|EEL... gi\|229168746, gi... - gi\|229168746\|ref\|ZP_04296467.1\| DNA-entry nuclease [Bacillus cereus AH621], gi\|228614758\|gb\|EEK71862... gi\|89208849, gi\|... - gi\|89208849\|ref\|ZP_01187332.1\| possible competence-specific nuclease [Bacillus weihenstephanensis KB...	1.0E-60	[1..144]	[1..144]
gi\|42820789 - gi\|42820789\|emb\|CAE02625.1\| NucA [Bacillus amyloliquefaciens] gi\|42820789 - gi\|42820789\|emb\|CAE02625.1\| NucA [Bacillus amyloliquefaciens FZB42]	3.0E-60	[25..144]	[29..148]
gi\|52784211, gi\|... - gi\|52784211\|ref\|YP_090040.1\| NucA [Bacillus licheniformis ATCC 14580], gi\|52346713\|gb\|AAU39347.1\| Nu...	8.0E-56	[1..143]	[1..147]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLKGIIIS IIAILSILVA VYEVLVPEET STKKTNAYDQ VLEFPKERYP ETGKHITDAI  60
   61 KEGHSEVCTI DRGGAADRRK LSLAPYPSKK GYDRDEWPMA MCKEGGKGAH IEYISPADNR 120
  121 GAGSWVGNKL DKYPDGTRVK FDVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.277	a.28.1	ACP-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits